{ "general": { "date": "2019-11-16 00:05:16", "title": "ENCSR356KRQ (subsampled 1/400)", "description": "ATAC-seq on primary keratinocytes in day 0.0 of differentiation", "pipeline_ver": "v1.5.3", "pipeline_type": "atac", "genome": "hg38", "aligner": "bowtie2", "seq_endedness": { "rep1": { "paired_end": true }, "rep2": { "paired_end": true } }, "peak_caller": "macs2" }, "align": { "samstat": { "rep1": { "total_reads": 691166, "total_reads_qc_failed": 0, "duplicate_reads": 0, "duplicate_reads_qc_failed": 0, "mapped_reads": 680479, "mapped_reads_qc_failed": 0, "pct_mapped_reads": 98.5, "paired_reads": 691166, "paired_reads_qc_failed": 0, "read1": 345583, "read1_qc_failed": 0, "read2": 345583, "read2_qc_failed": 0, "properly_paired_reads": 556054, "properly_paired_reads_qc_failed": 0, "pct_properly_paired_reads": 80.5, "with_itself": 676210, "with_itself_qc_failed": 0, "singletons": 4269, "singletons_qc_failed": 0, "pct_singletons": 0.6, "diff_chroms": 15177, "diff_chroms_qc_failed": 0 }, 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"rep1-pr1_vs_rep1-pr2": { "frip": 0.14732312947513632 }, "rep2-pr1_vs_rep2-pr2": { "frip": 0.1404063602943874 }, "pooled-pr1_vs_pooled-pr2": { "frip": 0.18667986927817518 } }, "idr": { "rep1_vs_rep2": { "frip": 0.008217028573938285 }, "rep1-pr1_vs_rep1-pr2": { "frip": 0.0029779500317502023 }, "rep2-pr1_vs_rep2-pr2": { "frip": 0.0042833662305643404 }, "pooled-pr1_vs_pooled-pr2": { "frip": 0.00857537566553739 } } }, "frac_reads_in_annot": { "rep1": { "fri_dhs": 0.46616961177166133, "fri_blacklist": 0.0005758829840811053, "fri_prom": 0.15275788828308043, "fri_enh": 0.39283540257067157 }, "rep2": { "fri_dhs": 0.43002061885928544, "fri_blacklist": 0.000680569109866968, "fri_prom": 0.13694297894821805, "fri_enh": 0.3754631905666884 } } } }