StartDate: 2022-10-01 11:05:30+00:00 CpuId: 8x AMD (unknown model) [Zen 3], 7nm CommitSHA: 9368eddea8879e44b245fe945652cfe39f9313dd CommitTime: 2022-10-01 09:26:42 +0200 CommitAuthor: Matthias Krack CommitSubject: Fix generic build for ELPA Populating docker build cache... done. #################### Building Image cp2k-aiida #################### Dockerfile: /tools/docker/Dockerfile.test_aiida Build-Path: / Build-Args: GIT_COMMIT_SHA=9368eddea8879e44b245fe945652cfe39f9313dd Sending build context to Docker daemon 364.4MB Step 1/41 : FROM ubuntu:22.04 22.04: Pulling from library/ubuntu 2b55860d4c66: Already exists Digest: sha256:20fa2d7bb4de7723f542be5923b06c4d704370f0390e4ae9e1c833c8785644c1 Status: Downloaded newer image for ubuntu:22.04 ---> 2dc39ba059dc Step 2/41 : WORKDIR /opt/cp2k-toolchain ---> Using cache ---> 32aca1d653b2 Step 3/41 : COPY ./tools/toolchain/install_requirements*.sh ./ ---> Using cache ---> 5488e0d770c9 Step 4/41 : RUN ./install_requirements.sh ubuntu:22.04 ---> Using cache ---> 9b97f4a42a10 Step 5/41 : RUN mkdir scripts ---> Using cache ---> 3f47591c8c04 Step 6/41 : COPY ./tools/toolchain/scripts/VERSION ./tools/toolchain/scripts/parse_if.py ./tools/toolchain/scripts/tool_kit.sh ./tools/toolchain/scripts/common_vars.sh ./tools/toolchain/scripts/signal_trap.sh ./tools/toolchain/scripts/get_openblas_arch.sh ./scripts/ ---> Using cache ---> 2ad8435b7ce8 Step 7/41 : COPY ./tools/toolchain/install_cp2k_toolchain.sh . ---> Using cache ---> 45674aab26be Step 8/41 : RUN ./install_cp2k_toolchain.sh --install-all --mpi-mode=mpich --target-cpu=native --with-gcc=system --dry-run ---> Using cache ---> aa97ffb7c194 Step 9/41 : COPY ./tools/toolchain/scripts/stage0/ ./scripts/stage0/ ---> Using cache ---> ad58a6aa6d6f Step 10/41 : RUN ./scripts/stage0/install_stage0.sh && rm -rf ./build ---> Using cache ---> 342d3cd3629b Step 11/41 : COPY ./tools/toolchain/scripts/stage1/ ./scripts/stage1/ ---> Using cache ---> acd23606f23a Step 12/41 : RUN ./scripts/stage1/install_stage1.sh && rm -rf ./build ---> Using cache ---> db2a952e40b5 Step 13/41 : COPY ./tools/toolchain/scripts/stage2/ ./scripts/stage2/ ---> Using cache ---> e4e7cbd52905 Step 14/41 : RUN ./scripts/stage2/install_stage2.sh && rm -rf ./build ---> Using cache ---> bd98dab7949a Step 15/41 : COPY ./tools/toolchain/scripts/stage3/ ./scripts/stage3/ ---> Using cache ---> b6a64a044bfd Step 16/41 : RUN ./scripts/stage3/install_stage3.sh && rm -rf ./build ---> Using cache ---> a3b522a31246 Step 17/41 : COPY ./tools/toolchain/scripts/stage4/ ./scripts/stage4/ ---> Using cache ---> 9d44a0486586 Step 18/41 : RUN ./scripts/stage4/install_stage4.sh && rm -rf ./build ---> Using cache ---> 10fbc90f678e Step 19/41 : COPY ./tools/toolchain/scripts/stage5/ ./scripts/stage5/ ---> Using cache ---> 2741d3655e09 Step 20/41 : RUN ./scripts/stage5/install_stage5.sh && rm -rf ./build ---> Using cache ---> 615baa67425f Step 21/41 : COPY ./tools/toolchain/scripts/stage6/ ./scripts/stage6/ ---> Using cache ---> 97755ebf1de7 Step 22/41 : RUN ./scripts/stage6/install_stage6.sh && rm -rf ./build ---> Using cache ---> 3dc114bdf967 Step 23/41 : COPY ./tools/toolchain/scripts/stage7/ ./scripts/stage7/ ---> Using cache ---> d2150cdb09b0 Step 24/41 : RUN ./scripts/stage7/install_stage7.sh && rm -rf ./build ---> Using cache ---> fbc3c5529a10 Step 25/41 : COPY ./tools/toolchain/scripts/stage8/ ./scripts/stage8/ ---> Using cache ---> 20f7cab8c6e1 Step 26/41 : RUN ./scripts/stage8/install_stage8.sh && rm -rf ./build ---> Using cache ---> 8f942c2bb3e3 Step 27/41 : COPY ./tools/toolchain/scripts/arch_base.tmpl ./tools/toolchain/scripts/generate_arch_files.sh ./scripts/ ---> Using cache ---> 749d1a3ab7a6 Step 28/41 : RUN ./scripts/generate_arch_files.sh && rm -rf ./build ---> Using cache ---> 26044bb6df86 Step 29/41 : WORKDIR /opt/cp2k ---> Using cache ---> 8bbda2ac1715 Step 30/41 : COPY ./Makefile . ---> Using cache ---> 7cb57dcf2a1c Step 31/41 : COPY ./src ./src ---> Using cache ---> e67b85417180 Step 32/41 : COPY ./exts ./exts ---> Using cache ---> c6adb6d8d5b0 Step 33/41 : COPY ./tools/build_utils ./tools/build_utils ---> Using cache ---> 14c25304aa4d Step 34/41 : RUN /bin/bash -c " mkdir -p arch && ln -vs /opt/cp2k-toolchain/install/arch/local.sdbg ./arch/ && echo 'Compiling cp2k...' && source /opt/cp2k-toolchain/install/setup && ( make -j ARCH=local VERSION=sdbg &> /dev/null || true )" ---> Using cache ---> a46ea23e7220 Step 35/41 : COPY ./data ./data ---> Using cache ---> 1adf8ba6eda1 Step 36/41 : COPY ./tests ./tests ---> Using cache ---> 0e799f14d971 Step 37/41 : COPY ./tools/regtesting ./tools/regtesting ---> Using cache ---> 7261ee8d3c90 Step 38/41 : COPY ./tools/docker/scripts/test_aiida.sh . ---> 87715899b0a9 Step 39/41 : RUN ./test_aiida.sh 2>&1 | tee report.log ---> Running in 66126f91fb58 ========== Compiling CP2K ========== Compiling cp2k... done. ========== Installing Dependencies ========== debconf: delaying package configuration, since apt-utils is not installed (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13430 files and directories currently installed.) Preparing to unpack .../python3.10_3.10.6-1~22.04_amd64.deb ... Unpacking python3.10 (3.10.6-1~22.04) over (3.10.4-3ubuntu0.1) ... Preparing to unpack .../libpython3.10-stdlib_3.10.6-1~22.04_amd64.deb ... Unpacking libpython3.10-stdlib:amd64 (3.10.6-1~22.04) over (3.10.4-3ubuntu0.1) ... Preparing to unpack .../python3.10-minimal_3.10.6-1~22.04_amd64.deb ... Unpacking python3.10-minimal (3.10.6-1~22.04) over (3.10.4-3ubuntu0.1) ... Preparing to unpack .../libpython3.10-minimal_3.10.6-1~22.04_amd64.deb ... Unpacking libpython3.10-minimal:amd64 (3.10.6-1~22.04) over (3.10.4-3ubuntu0.1) ... Setting up libpython3.10-minimal:amd64 (3.10.6-1~22.04) ... Setting up python3.10-minimal (3.10.6-1~22.04) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13430 files and directories currently installed.) Preparing to unpack .../python3-minimal_3.10.6-1~22.04_amd64.deb ... Unpacking python3-minimal (3.10.6-1~22.04) over (3.10.4-0ubuntu2) ... Setting up python3-minimal (3.10.6-1~22.04) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13430 files and directories currently installed.) Preparing to unpack .../00-python3_3.10.6-1~22.04_amd64.deb ... Unpacking python3 (3.10.6-1~22.04) over (3.10.4-0ubuntu2) ... Preparing to unpack .../01-libpython3-stdlib_3.10.6-1~22.04_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.10.6-1~22.04) over (3.10.4-0ubuntu2) ... Selecting previously unselected package cron. Preparing to unpack .../02-cron_3.0pl1-137ubuntu3_amd64.deb ... Unpacking cron (3.0pl1-137ubuntu3) ... Selecting previously unselected package libmd0:amd64. Preparing to unpack .../03-libmd0_1.0.4-1build1_amd64.deb ... Unpacking libmd0:amd64 (1.0.4-1build1) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../04-libbsd0_0.11.5-1_amd64.deb ... Unpacking libbsd0:amd64 (0.11.5-1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../05-libedit2_3.1-20210910-1build1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20210910-1build1) ... Selecting previously unselected package libcbor0.8:amd64. Preparing to unpack .../06-libcbor0.8_0.8.0-2ubuntu1_amd64.deb ... Unpacking libcbor0.8:amd64 (0.8.0-2ubuntu1) ... Selecting previously unselected package libfido2-1:amd64. Preparing to unpack .../07-libfido2-1_1.10.0-1_amd64.deb ... Unpacking libfido2-1:amd64 (1.10.0-1) ... Selecting previously unselected package openssh-client. Preparing to unpack .../08-openssh-client_1%3a8.9p1-3_amd64.deb ... Unpacking openssh-client (1:8.9p1-3) ... Selecting previously unselected package openssh-sftp-server. Preparing to unpack .../09-openssh-sftp-server_1%3a8.9p1-3_amd64.deb ... Unpacking openssh-sftp-server (1:8.9p1-3) ... Selecting previously unselected package ucf. Preparing to unpack .../10-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package libwrap0:amd64. Preparing to unpack .../11-libwrap0_7.6.q-31build2_amd64.deb ... Unpacking libwrap0:amd64 (7.6.q-31build2) ... Selecting previously unselected package openssh-server. Preparing to unpack .../12-openssh-server_1%3a8.9p1-3_amd64.deb ... Unpacking openssh-server (1:8.9p1-3) ... Selecting previously unselected package ssh. Preparing to unpack .../13-ssh_1%3a8.9p1-3_all.deb ... Unpacking ssh (1:8.9p1-3) ... Selecting previously unselected package libpopt0:amd64. Preparing to unpack .../14-libpopt0_1.18-3build1_amd64.deb ... Unpacking libpopt0:amd64 (1.18-3build1) ... Selecting previously unselected package locales. Preparing to unpack .../15-locales_2.35-0ubuntu3.1_all.deb ... Unpacking locales (2.35-0ubuntu3.1) ... Selecting previously unselected package logrotate. Preparing to unpack .../16-logrotate_3.19.0-1ubuntu1.1_amd64.deb ... Unpacking logrotate (3.19.0-1ubuntu1.1) ... Selecting previously unselected package netbase. Preparing to unpack .../17-netbase_6.3_all.deb ... Unpacking netbase (6.3) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../18-python3-pkg-resources_59.6.0-1.2_all.deb ... Unpacking python3-pkg-resources (59.6.0-1.2) ... Selecting previously unselected package sudo. Preparing to unpack .../19-sudo_1.9.9-1ubuntu2_amd64.deb ... Unpacking sudo (1.9.9-1ubuntu2) ... Selecting previously unselected package tzdata. Preparing to unpack .../20-tzdata_2022c-0ubuntu0.22.04.0_all.deb ... Unpacking tzdata (2022c-0ubuntu0.22.04.0) ... Selecting previously unselected package erlang-base. Preparing to unpack .../21-erlang-base_1%3a24.2.1+dfsg-1_amd64.deb ... Unpacking erlang-base (1:24.2.1+dfsg-1) ... Selecting previously unselected package erlang-asn1. Preparing to unpack .../22-erlang-asn1_1%3a24.2.1+dfsg-1_amd64.deb ... Unpacking erlang-asn1 (1:24.2.1+dfsg-1) ... Selecting previously unselected package erlang-crypto. Preparing to unpack .../23-erlang-crypto_1%3a24.2.1+dfsg-1_amd64.deb ... Unpacking erlang-crypto (1:24.2.1+dfsg-1) ... Selecting previously unselected package erlang-public-key. Preparing to unpack .../24-erlang-public-key_1%3a24.2.1+dfsg-1_amd64.deb ... Unpacking erlang-public-key (1:24.2.1+dfsg-1) ... Selecting previously unselected package erlang-mnesia. Preparing to unpack .../25-erlang-mnesia_1%3a24.2.1+dfsg-1_amd64.deb ... Unpacking erlang-mnesia (1:24.2.1+dfsg-1) ... Selecting previously unselected package erlang-runtime-tools. Preparing to unpack .../26-erlang-runtime-tools_1%3a24.2.1+dfsg-1_amd64.deb ... Unpacking erlang-runtime-tools (1:24.2.1+dfsg-1) ... Selecting previously unselected package erlang-ssl. Preparing to unpack .../27-erlang-ssl_1%3a24.2.1+dfsg-1_amd64.deb ... Unpacking erlang-ssl (1:24.2.1+dfsg-1) ... Selecting previously unselected package erlang-eldap. Preparing to unpack .../28-erlang-eldap_1%3a24.2.1+dfsg-1_amd64.deb ... Unpacking erlang-eldap (1:24.2.1+dfsg-1) ... Selecting previously unselected package erlang-ftp. Preparing to unpack .../29-erlang-ftp_1%3a24.2.1+dfsg-1_amd64.deb ... Unpacking erlang-ftp (1:24.2.1+dfsg-1) ... Selecting previously unselected package erlang-tftp. Preparing to unpack .../30-erlang-tftp_1%3a24.2.1+dfsg-1_amd64.deb ... Unpacking erlang-tftp (1:24.2.1+dfsg-1) ... Selecting previously unselected package erlang-inets. Preparing to unpack .../31-erlang-inets_1%3a24.2.1+dfsg-1_amd64.deb ... Unpacking erlang-inets (1:24.2.1+dfsg-1) ... Selecting previously unselected package erlang-snmp. Preparing to unpack .../32-erlang-snmp_1%3a24.2.1+dfsg-1_amd64.deb ... Unpacking erlang-snmp (1:24.2.1+dfsg-1) ... Selecting previously unselected package erlang-os-mon. Preparing to unpack .../33-erlang-os-mon_1%3a24.2.1+dfsg-1_amd64.deb ... Unpacking erlang-os-mon (1:24.2.1+dfsg-1) ... Selecting previously unselected package erlang-parsetools. Preparing to unpack .../34-erlang-parsetools_1%3a24.2.1+dfsg-1_amd64.deb ... Unpacking erlang-parsetools (1:24.2.1+dfsg-1) ... Selecting previously unselected package erlang-syntax-tools. Preparing to unpack .../35-erlang-syntax-tools_1%3a24.2.1+dfsg-1_amd64.deb ... Unpacking erlang-syntax-tools (1:24.2.1+dfsg-1) ... Selecting previously unselected package erlang-tools. Preparing to unpack .../36-erlang-tools_1%3a24.2.1+dfsg-1_amd64.deb ... Unpacking erlang-tools (1:24.2.1+dfsg-1) ... Selecting previously unselected package erlang-xmerl. Preparing to unpack .../37-erlang-xmerl_1%3a24.2.1+dfsg-1_amd64.deb ... Unpacking erlang-xmerl (1:24.2.1+dfsg-1) ... Selecting previously unselected package libexpat1-dev:amd64. Preparing to unpack .../38-libexpat1-dev_2.4.7-1_amd64.deb ... Unpacking libexpat1-dev:amd64 (2.4.7-1) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../39-libjs-jquery_3.6.0+dfsg+~3.5.13-1_all.deb ... Unpacking libjs-jquery (3.6.0+dfsg+~3.5.13-1) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../40-libjs-underscore_1.13.2~dfsg-2_all.deb ... Unpacking libjs-underscore (1.13.2~dfsg-2) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../41-libjs-sphinxdoc_4.3.2-1_all.deb ... Unpacking libjs-sphinxdoc (4.3.2-1) ... Selecting previously unselected package libjson-perl. Preparing to unpack .../42-libjson-perl_4.04000-1_all.deb ... Unpacking libjson-perl (4.04000-1) ... Selecting previously unselected package libllvm14:amd64. Preparing to unpack .../43-libllvm14_1%3a14.0.0-1ubuntu1_amd64.deb ... Unpacking libllvm14:amd64 (1:14.0.0-1ubuntu1) ... Selecting previously unselected package libpq5:amd64. Preparing to unpack .../44-libpq5_14.5-0ubuntu0.22.04.1_amd64.deb ... Unpacking libpq5:amd64 (14.5-0ubuntu0.22.04.1) ... Selecting previously unselected package libssl-dev:amd64. Preparing to unpack .../45-libssl-dev_3.0.2-0ubuntu1.6_amd64.deb ... Unpacking libssl-dev:amd64 (3.0.2-0ubuntu1.6) ... Selecting previously unselected package libpq-dev. Preparing to unpack .../46-libpq-dev_14.5-0ubuntu0.22.04.1_amd64.deb ... Unpacking libpq-dev (14.5-0ubuntu0.22.04.1) ... Selecting previously unselected package libpython3.10:amd64. Preparing to unpack .../47-libpython3.10_3.10.6-1~22.04_amd64.deb ... Unpacking libpython3.10:amd64 (3.10.6-1~22.04) ... Selecting previously unselected package libpython3.10-dev:amd64. Preparing to unpack .../48-libpython3.10-dev_3.10.6-1~22.04_amd64.deb ... Unpacking libpython3.10-dev:amd64 (3.10.6-1~22.04) ... Selecting previously unselected package libpython3-dev:amd64. Preparing to unpack .../49-libpython3-dev_3.10.6-1~22.04_amd64.deb ... Unpacking libpython3-dev:amd64 (3.10.6-1~22.04) ... Selecting previously unselected package libxslt1.1:amd64. Preparing to unpack .../50-libxslt1.1_1.1.34-4ubuntu0.22.04.1_amd64.deb ... Unpacking libxslt1.1:amd64 (1.1.34-4ubuntu0.22.04.1) ... Selecting previously unselected package postgresql-client-common. Preparing to unpack .../51-postgresql-client-common_238_all.deb ... Unpacking postgresql-client-common (238) ... Selecting previously unselected package postgresql-client-14. Preparing to unpack .../52-postgresql-client-14_14.5-0ubuntu0.22.04.1_amd64.deb ... Unpacking postgresql-client-14 (14.5-0ubuntu0.22.04.1) ... Selecting previously unselected package ssl-cert. Preparing to unpack .../53-ssl-cert_1.1.2_all.deb ... Unpacking ssl-cert (1.1.2) ... Selecting previously unselected package postgresql-common. Preparing to unpack .../54-postgresql-common_238_all.deb ... Adding 'diversion of /usr/bin/pg_config to /usr/bin/pg_config.libpq-dev by postgresql-common' Unpacking postgresql-common (238) ... Selecting previously unselected package postgresql-14. Preparing to unpack .../55-postgresql-14_14.5-0ubuntu0.22.04.1_amd64.deb ... Unpacking postgresql-14 (14.5-0ubuntu0.22.04.1) ... Selecting previously unselected package postgresql. Preparing to unpack .../56-postgresql_14+238_all.deb ... Unpacking postgresql (14+238) ... Selecting previously unselected package python3.10-dev. Preparing to unpack .../57-python3.10-dev_3.10.6-1~22.04_amd64.deb ... Unpacking python3.10-dev (3.10.6-1~22.04) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../58-python3-lib2to3_3.10.6-1~22.04_all.deb ... Unpacking python3-lib2to3 (3.10.6-1~22.04) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../59-python3-distutils_3.10.6-1~22.04_all.deb ... Unpacking python3-distutils (3.10.6-1~22.04) ... Selecting previously unselected package python3-dev. Preparing to unpack .../60-python3-dev_3.10.6-1~22.04_amd64.deb ... Unpacking python3-dev (3.10.6-1~22.04) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../61-python3-setuptools_59.6.0-1.2_all.deb ... Unpacking python3-setuptools (59.6.0-1.2) ... Selecting previously unselected package python3-wheel. Preparing to unpack .../62-python3-wheel_0.37.1-2_all.deb ... Unpacking python3-wheel (0.37.1-2) ... Selecting previously unselected package python3-pip. Preparing to unpack .../63-python3-pip_22.0.2+dfsg-1_all.deb ... Unpacking python3-pip (22.0.2+dfsg-1) ... Selecting previously unselected package socat. Preparing to unpack .../64-socat_1.7.4.1-3ubuntu4_amd64.deb ... Unpacking socat (1.7.4.1-3ubuntu4) ... Selecting previously unselected package rabbitmq-server. Preparing to unpack .../65-rabbitmq-server_3.9.13-1_all.deb ... Unpacking rabbitmq-server (3.9.13-1) ... Setting up erlang-base (1:24.2.1+dfsg-1) ... Searching for services which depend on erlang and should be started... none found. Setting up libcbor0.8:amd64 (0.8.0-2ubuntu1) ... Setting up erlang-xmerl (1:24.2.1+dfsg-1) ... Setting up cron (3.0pl1-137ubuntu3) ... Adding group `crontab' (GID 102) ... Done. invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libpq5:amd64 (14.5-0ubuntu0.22.04.1) ... Setting up erlang-syntax-tools (1:24.2.1+dfsg-1) ... Setting up locales (2.35-0ubuntu3.1) ... Generating locales (this might take a while)... Generation complete. Setting up tzdata (2022c-0ubuntu0.22.04.0) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Oct 1 11:09:23 UTC 2022. Universal Time is now: Sat Oct 1 11:09:23 UTC 2022. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libpython3.10-stdlib:amd64 (3.10.6-1~22.04) ... Setting up erlang-parsetools (1:24.2.1+dfsg-1) ... Setting up libexpat1-dev:amd64 (2.4.7-1) ... Setting up libwrap0:amd64 (7.6.q-31build2) ... Setting up ssl-cert (1.1.2) ... Setting up socat (1.7.4.1-3ubuntu4) ... Setting up libssl-dev:amd64 (3.0.2-0ubuntu1.6) ... Setting up sudo (1.9.9-1ubuntu2) ... Setting up ucf (3.0043) ... Setting up erlang-asn1 (1:24.2.1+dfsg-1) ... Setting up erlang-tftp (1:24.2.1+dfsg-1) ... Setting up libmd0:amd64 (1.0.4-1build1) ... Setting up libjson-perl (4.04000-1) ... Setting up libxslt1.1:amd64 (1.1.34-4ubuntu0.22.04.1) ... Setting up erlang-mnesia (1:24.2.1+dfsg-1) ... Setting up netbase (6.3) ... Setting up libjs-jquery (3.6.0+dfsg+~3.5.13-1) ... Setting up erlang-crypto (1:24.2.1+dfsg-1) ... Setting up libfido2-1:amd64 (1.10.0-1) ... Setting up libbsd0:amd64 (0.11.5-1) ... Setting up libpython3-stdlib:amd64 (3.10.6-1~22.04) ... Setting up libjs-underscore (1.13.2~dfsg-2) ... Setting up libpopt0:amd64 (1.18-3build1) ... Setting up logrotate (3.19.0-1ubuntu1.1) ... Setting up postgresql-client-common (238) ... Setting up libpython3.10:amd64 (3.10.6-1~22.04) ... Setting up python3.10 (3.10.6-1~22.04) ... Setting up erlang-runtime-tools (1:24.2.1+dfsg-1) ... Setting up libedit2:amd64 (3.1-20210910-1build1) ... Setting up erlang-tools (1:24.2.1+dfsg-1) ... Setting up libpq-dev (14.5-0ubuntu0.22.04.1) ... Setting up python3 (3.10.6-1~22.04) ... Setting up postgresql-client-14 (14.5-0ubuntu0.22.04.1) ... update-alternatives: using /usr/share/postgresql/14/man/man1/psql.1.gz to provide /usr/share/man/man1/psql.1.gz (psql.1.gz) in auto mode Setting up erlang-snmp (1:24.2.1+dfsg-1) ... Setting up erlang-public-key (1:24.2.1+dfsg-1) ... Setting up postgresql-common (238) ... Adding user postgres to group ssl-cert Creating config file /etc/postgresql-common/createcluster.conf with new version Building PostgreSQL dictionaries from installed myspell/hunspell packages... Removing obsolete dictionary files: Setting up libpython3.10-dev:amd64 (3.10.6-1~22.04) ... Setting up libjs-sphinxdoc (4.3.2-1) ... Setting up libllvm14:amd64 (1:14.0.0-1ubuntu1) ... Setting up python3.10-dev (3.10.6-1~22.04) ... Setting up python3-lib2to3 (3.10.6-1~22.04) ... Setting up erlang-ssl (1:24.2.1+dfsg-1) ... Setting up python3-pkg-resources (59.6.0-1.2) ... Setting up python3-distutils (3.10.6-1~22.04) ... Setting up postgresql-14 (14.5-0ubuntu0.22.04.1) ... Creating new PostgreSQL cluster 14/main ... /usr/lib/postgresql/14/bin/initdb -D /var/lib/postgresql/14/main --auth-local peer --auth-host scram-sha-256 --no-instructions The files belonging to this database system will be owned by user "postgres". This user must also own the server process. The database cluster will be initialized with locale "C.UTF-8". The default database encoding has accordingly been set to "UTF8". The default text search configuration will be set to "english". Data page checksums are disabled. fixing permissions on existing directory /var/lib/postgresql/14/main ... ok creating subdirectories ... ok selecting dynamic shared memory implementation ... posix selecting default max_connections ... 100 selecting default shared_buffers ... 128MB selecting default time zone ... Etc/UTC creating configuration files ... ok running bootstrap script ... ok performing post-bootstrap initialization ... ok syncing data to disk ... ok update-alternatives: using /usr/share/postgresql/14/man/man1/postmaster.1.gz to provide /usr/share/man/man1/postmaster.1.gz (postmaster.1.gz) in auto mode invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libpython3-dev:amd64 (3.10.6-1~22.04) ... Setting up python3-setuptools (59.6.0-1.2) ... Setting up openssh-client (1:8.9p1-3) ... update-alternatives: using /usr/bin/ssh to provide /usr/bin/rsh (rsh) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/rsh.1.gz because associated file /usr/share/man/man1/ssh.1.gz (of link group rsh) doesn't exist update-alternatives: using /usr/bin/slogin to provide /usr/bin/rlogin (rlogin) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/rlogin.1.gz because associated file /usr/share/man/man1/slogin.1.gz (of link group rlogin) doesn't exist update-alternatives: using /usr/bin/scp to provide /usr/bin/rcp (rcp) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/rcp.1.gz because associated file /usr/share/man/man1/scp.1.gz (of link group rcp) doesn't exist Setting up erlang-os-mon (1:24.2.1+dfsg-1) ... Setting up python3-wheel (0.37.1-2) ... Setting up erlang-eldap (1:24.2.1+dfsg-1) ... Setting up python3-dev (3.10.6-1~22.04) ... Setting up erlang-ftp (1:24.2.1+dfsg-1) ... Setting up python3-pip (22.0.2+dfsg-1) ... Setting up postgresql (14+238) ... Setting up openssh-sftp-server (1:8.9p1-3) ... Setting up openssh-server (1:8.9p1-3) ... Creating config file /etc/ssh/sshd_config with new version Creating SSH2 RSA key; this may take some time ... 3072 SHA256:xO4Af/RSPxEe+v/H/b6DWkVS4+RZsm8lgE65wO6ZWyQ root@66126f91fb58 (RSA) Creating SSH2 ECDSA key; this may take some time ... 256 SHA256:nx+thvSPjThQRnKSv9ucQWEnmAK5d86zFznAjy5HuUg root@66126f91fb58 (ECDSA) Creating SSH2 ED25519 key; this may take some time ... 256 SHA256:zGic+eIVcHFNVbRKo0B4NpHykumgVZLz3WABMcN9BWI root@66126f91fb58 (ED25519) invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up erlang-inets (1:24.2.1+dfsg-1) ... Setting up rabbitmq-server (3.9.13-1) ... Adding group `rabbitmq' (GID 106) ... Done. Adding system user `rabbitmq' (UID 104) ... Adding new user `rabbitmq' (UID 104) with group `rabbitmq' ... Not creating home directory `/var/lib/rabbitmq'. invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up ssh (1:8.9p1-3) ... Processing triggers for libc-bin (2.35-0ubuntu3.1) ... ./test_aiida.sh: line 39: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) /bin/bash: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) Generating locales (this might take a while)... en_US.UTF-8... done Generation complete. Adding user `ubuntu' ... Adding new group `ubuntu' (1000) ... Adding new user `ubuntu' (1000) with group `ubuntu' ... Creating home directory `/home/ubuntu' ... Copying files from `/etc/skel' ... ========== Installing AiiDA-CP2K plugin ========== Processing /opt/aiida-cp2k Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Collecting ruamel.yaml>=0.16.5 Downloading ruamel.yaml-0.17.21-py3-none-any.whl (109 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 109.5/109.5 KB 3.3 MB/s eta 0:00:00 Collecting cp2k-output-tools Downloading cp2k_output_tools-0.5.0-py3-none-any.whl (22 kB) Collecting ase Downloading ase-3.22.1-py3-none-any.whl (2.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.2/2.2 MB 9.8 MB/s eta 0:00:00 Collecting aiida-core<2.0.0,>=1.1.0 Downloading aiida_core-1.6.9-py3-none-any.whl (1.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 15.6 MB/s eta 0:00:00 Collecting aiida-gaussian-datatypes Downloading aiida_gaussian_datatypes-0.5.1-py3-none-any.whl (25 kB) Collecting pytest~=6.0 Downloading pytest-6.2.5-py3-none-any.whl (280 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 280.7/280.7 KB 16.7 MB/s eta 0:00:00 Collecting coverage Downloading coverage-6.5.0-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (213 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 213.3/213.3 KB 19.3 MB/s eta 0:00:00 Collecting pytest-cov~=2.11.1 Downloading pytest_cov-2.11.1-py2.py3-none-any.whl (20 kB) Collecting pgtest~=1.3 Downloading pgtest-1.3.2-py2.py3-none-any.whl (9.1 kB) Collecting pgsu~=0.2.0 Downloading pgsu-0.2.2.tar.gz (8.5 kB) Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Collecting tabulate~=0.8.5 Downloading tabulate-0.8.10-py3-none-any.whl (29 kB) Collecting click-config-file~=0.6.0 Downloading click_config_file-0.6.0-py2.py3-none-any.whl (6.0 kB) Collecting psutil~=5.6 Downloading psutil-5.9.2-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (282 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 282.8/282.8 KB 16.8 MB/s eta 0:00:00 Collecting kiwipy[rmq]~=0.7.5 Downloading kiwipy-0.7.6-py3-none-any.whl (29 kB) Collecting pamqp~=2.3 Downloading pamqp-2.3.0-py2.py3-none-any.whl (28 kB) Collecting click-spinner~=0.1.8 Downloading click_spinner-0.1.10-py2.py3-none-any.whl (4.0 kB) Collecting simplejson~=3.16 Downloading simplejson-3.17.6-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (137 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 137.1/137.1 KB 19.2 MB/s eta 0:00:00 Collecting alembic~=1.2 Downloading alembic-1.8.1-py3-none-any.whl (209 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 209.8/209.8 KB 19.6 MB/s eta 0:00:00 Collecting psycopg2-binary~=2.8.3 Downloading psycopg2-binary-2.8.6.tar.gz (384 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 384.7/384.7 KB 19.8 MB/s eta 0:00:00 Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting numpy~=1.17 Downloading numpy-1.23.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (17.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 17.1/17.1 MB 47.4 MB/s eta 0:00:00 Collecting ipython~=7.20 Downloading ipython-7.34.0-py3-none-any.whl (793 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 793.8/793.8 KB 61.9 MB/s eta 0:00:00 Collecting ete3~=3.1 Downloading ete3-3.1.2.tar.gz (4.7 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.7/4.7 MB 76.2 MB/s eta 0:00:00 Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting pytz~=2019.3 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 509.2/509.2 KB 57.4 MB/s eta 0:00:00 Collecting reentry~=1.3 Downloading reentry-1.3.3-py3-none-any.whl (17 kB) Collecting jinja2~=2.10 Downloading Jinja2-2.11.3-py2.py3-none-any.whl (125 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 125.7/125.7 KB 24.9 MB/s eta 0:00:00 Collecting jsonschema~=3.0 Downloading jsonschema-3.2.0-py2.py3-none-any.whl (56 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 56.3/56.3 KB 13.1 MB/s eta 0:00:00 Collecting tqdm~=4.45 Downloading tqdm-4.64.1-py2.py3-none-any.whl (78 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 78.5/78.5 KB 16.4 MB/s eta 0:00:00 Collecting aldjemy~=0.9.1 Downloading aldjemy-0.9.1-py3-none-any.whl (26 kB) Collecting archive-path~=0.2.1 Downloading archive_path-0.2.1-py3-none-any.whl (17 kB) Collecting sqlalchemy-utils~=0.36.0 Downloading SQLAlchemy-Utils-0.36.5.tar.gz (131 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 131.2/131.2 KB 31.0 MB/s eta 0:00:00 Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting pyyaml~=5.4 Downloading PyYAML-5.4.1.tar.gz (175 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 175.1/175.1 KB 33.4 MB/s eta 0:00:00 Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Collecting sqlalchemy~=1.3.10 Downloading SQLAlchemy-1.3.24.tar.gz (6.4 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 6.4/6.4 MB 93.4 MB/s eta 0:00:00 Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting aio-pika~=6.6 Downloading aio_pika-6.8.2-py3-none-any.whl (42 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 42.3/42.3 KB 9.5 MB/s eta 0:00:00 Collecting click~=7.1 Downloading click-7.1.2-py2.py3-none-any.whl (82 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 82.8/82.8 KB 15.5 MB/s eta 0:00:00 Collecting tzlocal~=2.0 Downloading tzlocal-2.1-py2.py3-none-any.whl (16 kB) Collecting wrapt~=1.11.1 Downloading wrapt-1.11.2.tar.gz (27 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting markupsafe<2.1 Downloading MarkupSafe-2.0.1-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (30 kB) Collecting upf-to-json~=0.9.2 Downloading upf_to_json-0.9.5-py3-none-any.whl (12 kB) Collecting paramiko>=2.7.2,~=2.7 Downloading paramiko-2.11.0-py2.py3-none-any.whl (212 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 212.9/212.9 KB 38.1 MB/s eta 0:00:00 Collecting python-dateutil~=2.8 Downloading python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 247.7/247.7 KB 43.5 MB/s eta 0:00:00 Collecting circus~=0.17.1 Downloading circus-0.17.1-py3-none-any.whl (182 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 182.7/182.7 KB 36.5 MB/s eta 0:00:00 Collecting django~=2.2 Downloading Django-2.2.28-py3-none-any.whl (7.5 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 7.5/7.5 MB 111.7 MB/s eta 0:00:00 Collecting plumpy~=0.20.0 Downloading plumpy-0.20.0-py3-none-any.whl (60 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 60.6/60.6 KB 15.0 MB/s eta 0:00:00 Collecting click-completion~=0.5.1 Downloading click-completion-0.5.2.tar.gz (10 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting graphviz~=0.13 Downloading graphviz-0.20.1-py3-none-any.whl (47 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 47.0/47.0 KB 9.7 MB/s eta 0:00:00 Collecting pg8000>=1.10 Downloading pg8000-1.29.1-py3-none-any.whl (34 kB) Collecting py>=1.8.2 Downloading py-1.11.0-py2.py3-none-any.whl (98 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 98.7/98.7 KB 18.5 MB/s eta 0:00:00 Collecting pluggy<2.0,>=0.12 Downloading pluggy-1.0.0-py2.py3-none-any.whl (13 kB) Collecting attrs>=19.2.0 Downloading attrs-22.1.0-py2.py3-none-any.whl (58 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 58.8/58.8 KB 13.1 MB/s eta 0:00:00 Collecting toml Downloading toml-0.10.2-py2.py3-none-any.whl (16 kB) Collecting packaging Downloading packaging-21.3-py3-none-any.whl (40 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 40.8/40.8 KB 8.8 MB/s eta 0:00:00 Collecting iniconfig Downloading iniconfig-1.1.1-py2.py3-none-any.whl (5.0 kB) Collecting ruamel.yaml.clib>=0.2.6 Downloading ruamel.yaml.clib-0.2.6-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (519 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 519.3/519.3 KB 65.9 MB/s eta 0:00:00 Collecting cp2k-input-tools>=0.8.0 Downloading cp2k_input_tools-0.8.2-py3-none-any.whl (1.4 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.4/1.4 MB 98.0 MB/s eta 0:00:00 Collecting scipy>=1.1.0 Downloading scipy-1.9.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (43.9 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 43.9/43.9 MB 28.3 MB/s eta 0:00:00 Collecting matplotlib>=3.1.0 Downloading matplotlib-3.6.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (11.8 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 11.8/11.8 MB 120.8 MB/s eta 0:00:00 Collecting cp2k-output-tools Downloading cp2k_output_tools-0.4.0-py3-none-any.whl (21 kB) Downloading cp2k_output_tools-0.3.1-py3-none-any.whl (18 kB) Collecting regex<2021.0,>=2020.1 Downloading regex-2020.11.13.tar.gz (694 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 694.6/694.6 KB 63.0 MB/s eta 0:00:00 Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting aiormq<4,>=3.2.3 Downloading aiormq-3.3.1-py3-none-any.whl (28 kB) Collecting yarl Downloading yarl-1.8.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (263 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 264.0/264.0 KB 40.3 MB/s eta 0:00:00 Collecting Mako Downloading Mako-1.2.3-py3-none-any.whl (78 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 78.7/78.7 KB 17.8 MB/s eta 0:00:00 Collecting pyzmq>=17.0 Downloading pyzmq-24.0.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (1.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.1/1.1 MB 89.3 MB/s eta 0:00:00 Collecting tornado>=5.0.2 Downloading tornado-6.2-cp37-abi3-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (423 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 424.0/424.0 KB 54.0 MB/s eta 0:00:00 Collecting shellingham Downloading shellingham-1.5.0-py2.py3-none-any.whl (9.3 kB) Collecting six Downloading six-1.16.0-py2.py3-none-any.whl (11 kB) Collecting configobj>=5.0.6 Downloading configobj-5.0.6.tar.gz (33 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting pydantic<2.0.0,>=1.8.2 Downloading pydantic-1.10.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (12.8 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 12.8/12.8 MB 125.8 MB/s eta 0:00:00 Collecting transitions<0.8,>=0.7 Downloading transitions-0.7.2-py2.py3-none-any.whl (55 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 55.6/55.6 KB 13.3 MB/s eta 0:00:00 Collecting pint<0.18,>=0.15 Downloading Pint-0.17-py2.py3-none-any.whl (204 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 205.0/205.0 KB 37.3 MB/s eta 0:00:00 Collecting sqlparse>=0.2.2 Downloading sqlparse-0.4.3-py3-none-any.whl (42 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 42.8/42.8 KB 9.7 MB/s eta 0:00:00 Collecting traitlets>=4.2 Downloading traitlets-5.4.0-py3-none-any.whl (107 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 107.1/107.1 KB 21.8 MB/s eta 0:00:00 Collecting prompt-toolkit!=3.0.0,!=3.0.1,<3.1.0,>=2.0.0 Downloading prompt_toolkit-3.0.31-py3-none-any.whl (382 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 382.3/382.3 KB 54.8 MB/s eta 0:00:00 Collecting matplotlib-inline Downloading matplotlib_inline-0.1.6-py3-none-any.whl (9.4 kB) Collecting decorator Downloading decorator-5.1.1-py3-none-any.whl (9.1 kB) Requirement already satisfied: setuptools>=18.5 in /usr/lib/python3/dist-packages (from ipython~=7.20->aiida-core<2.0.0,>=1.1.0->aiida-cp2k==1.5.0) (59.6.0) Collecting pexpect>4.3 Downloading pexpect-4.8.0-py2.py3-none-any.whl (59 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 59.0/59.0 KB 14.1 MB/s eta 0:00:00 Collecting pygments Downloading Pygments-2.13.0-py3-none-any.whl (1.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.1/1.1 MB 80.8 MB/s eta 0:00:00 Collecting jedi>=0.16 Downloading jedi-0.18.1-py2.py3-none-any.whl (1.6 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.6/1.6 MB 100.4 MB/s eta 0:00:00 Collecting backcall Downloading backcall-0.2.0-py2.py3-none-any.whl (11 kB) Collecting pickleshare Downloading pickleshare-0.7.5-py2.py3-none-any.whl (6.9 kB) Collecting pyrsistent>=0.14.0 Downloading pyrsistent-0.18.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (115 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 115.8/115.8 KB 22.2 MB/s eta 0:00:00 Collecting deprecation Downloading deprecation-2.1.0-py2.py3-none-any.whl (11 kB) Collecting pytray<0.4.0,>=0.2.2 Downloading pytray-0.3.2-py2.py3-none-any.whl (11 kB) Collecting shortuuid Downloading shortuuid-1.0.9-py3-none-any.whl (9.4 kB) Collecting async-generator Downloading async_generator-1.10-py3-none-any.whl (18 kB) Collecting aio-pika~=6.6 Downloading aio_pika-6.8.1-py3-none-any.whl (42 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 42.1/42.1 KB 9.3 MB/s eta 0:00:00 Collecting cycler>=0.10 Downloading cycler-0.11.0-py3-none-any.whl (6.4 kB) Collecting pyparsing>=2.2.1 Downloading pyparsing-3.0.9-py3-none-any.whl (98 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 98.3/98.3 KB 19.6 MB/s eta 0:00:00 Collecting kiwisolver>=1.0.1 Downloading kiwisolver-1.4.4-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (1.6 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.6/1.6 MB 103.5 MB/s eta 0:00:00 Collecting fonttools>=4.22.0 Downloading fonttools-4.37.4-py3-none-any.whl (960 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 960.8/960.8 KB 77.1 MB/s eta 0:00:00 Collecting pillow>=6.2.0 Downloading Pillow-9.2.0-cp310-cp310-manylinux_2_28_x86_64.whl (3.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.2/3.2 MB 125.0 MB/s eta 0:00:00 Collecting contourpy>=1.0.1 Downloading contourpy-1.0.5-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (295 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 295.9/295.9 KB 45.0 MB/s eta 0:00:00 Collecting cryptography>=2.5 Downloading cryptography-38.0.1-cp36-abi3-manylinux_2_28_x86_64.whl (4.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.2/4.2 MB 141.8 MB/s eta 0:00:00 Collecting bcrypt>=3.1.3 Downloading bcrypt-4.0.0-cp36-abi3-manylinux_2_28_x86_64.whl (594 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 594.4/594.4 KB 70.6 MB/s eta 0:00:00 Collecting pynacl>=1.0.1 Downloading PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (856 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 856.7/856.7 KB 86.3 MB/s eta 0:00:00 Collecting scramp>=1.4.1 Downloading scramp-1.4.1-py3-none-any.whl (8.5 kB) Collecting nest-asyncio~=1.4.0 Downloading nest_asyncio-1.4.3-py3-none-any.whl (5.3 kB) Collecting cffi>=1.12 Downloading cffi-1.15.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (441 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 441.8/441.8 KB 54.0 MB/s eta 0:00:00 Collecting parso<0.9.0,>=0.8.0 Downloading parso-0.8.3-py2.py3-none-any.whl (100 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100.8/100.8 KB 22.0 MB/s eta 0:00:00 Collecting ptyprocess>=0.5 Downloading ptyprocess-0.7.0-py2.py3-none-any.whl (13 kB) Collecting wcwidth Downloading wcwidth-0.2.5-py2.py3-none-any.whl (30 kB) Collecting typing-extensions>=4.1.0 Downloading typing_extensions-4.3.0-py3-none-any.whl (25 kB) Collecting asn1crypto>=1.4.0 Downloading asn1crypto-1.5.1-py2.py3-none-any.whl (105 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 105.0/105.0 KB 22.6 MB/s eta 0:00:00 Collecting multidict>=4.0 Downloading multidict-6.0.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (114 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 114.5/114.5 KB 22.0 MB/s eta 0:00:00 Collecting idna>=2.0 Downloading idna-3.4-py3-none-any.whl (61 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 61.5/61.5 KB 12.7 MB/s eta 0:00:00 Collecting pycparser Downloading pycparser-2.21-py2.py3-none-any.whl (118 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 118.7/118.7 KB 23.8 MB/s eta 0:00:00 Building wheels for collected packages: aiida-cp2k, click-completion, ete3, pgsu, psycopg2-binary, pyyaml, regex, sqlalchemy, sqlalchemy-utils, wrapt, configobj Building wheel for aiida-cp2k (pyproject.toml): started Building wheel for aiida-cp2k (pyproject.toml): finished with status 'done' Created wheel for aiida-cp2k: filename=aiida_cp2k-1.5.0-py3-none-any.whl size=27556 sha256=2ab2e1a6e3ff63e14fc6f1ef0c424262aaa7547d75383c9ad47946bec701a9c4 Stored in directory: /root/.cache/pip/wheels/f5/4d/c5/96aec96e5895bbad36e5a2f8f744774ccd9991aebbc95ebb6f Building wheel for click-completion (setup.py): started Building wheel for click-completion (setup.py): finished with status 'done' Created wheel for click-completion: filename=click_completion-0.5.2-py3-none-any.whl size=11202 sha256=3354fcf8d98804dc6745863ceabb72b2daf3136cc33ef7fb390d365f73a2353f Stored in directory: /root/.cache/pip/wheels/05/cf/ad/28cfa7e4767d4884bb1ddfda4326acbc804b0d837505ff1dc7 Building wheel for ete3 (setup.py): started Building wheel for ete3 (setup.py): finished with status 'done' Created wheel for ete3: filename=ete3-3.1.2-py3-none-any.whl size=2273013 sha256=a75d5ea201d4a9d39f3dddccd645ade6c8a579e10b4b07facd96dd52df36ef19 Stored in directory: /root/.cache/pip/wheels/2d/57/b0/e3203a462a984f3eed3cedea122a9fe3f23ed67b2b7d7df2bf Building wheel for pgsu (pyproject.toml): started Building wheel for pgsu (pyproject.toml): finished with status 'done' Created wheel for pgsu: filename=pgsu-0.2.2-py3-none-any.whl size=8850 sha256=053a521b4110cccdc57337cfa1b1a3e0168e2d0bfe120c92e7622d806e0bd102 Stored in directory: /root/.cache/pip/wheels/29/99/fc/1401b3a039664d4c0bf7ed25b69a5e3426137cf6017df45412 Building wheel for psycopg2-binary (setup.py): started Building wheel for psycopg2-binary (setup.py): finished with status 'done' Created wheel for psycopg2-binary: filename=psycopg2_binary-2.8.6-cp310-cp310-linux_x86_64.whl size=445114 sha256=cd17bec16de814076745797576e5f27fe1049bd4b2f8c92b6021235ce94508e3 Stored in directory: /root/.cache/pip/wheels/00/3d/07/c49775291721edb6168d276d38b8b83cc152c011de3e48d6f0 Building wheel for pyyaml (pyproject.toml): started Building wheel for pyyaml (pyproject.toml): finished with status 'done' Created wheel for pyyaml: filename=PyYAML-5.4.1-cp310-cp310-linux_x86_64.whl size=45657 sha256=02554536b8e76e4d3531128d836d4a176a3c6e0a339bd16963ffaba79e326fa8 Stored in directory: /root/.cache/pip/wheels/c7/0d/22/696ee92245ad710f506eee79bb05c740d8abccd3ecdb778683 Building wheel for regex (setup.py): started Building wheel for regex (setup.py): finished with status 'done' Created wheel for regex: filename=regex-2020.11.13-cp310-cp310-linux_x86_64.whl size=725052 sha256=c2612bc7b529e5d307a53ee29e74262eda1a7857a1980016ee629f19e22f29ca Stored in directory: /root/.cache/pip/wheels/b7/3a/15/2a9c535e101ab0d2e2440b54fc409178b1fba48aaeabe62097 Building wheel for sqlalchemy (setup.py): started Building wheel for sqlalchemy (setup.py): finished with status 'done' Created wheel for sqlalchemy: filename=SQLAlchemy-1.3.24-cp310-cp310-linux_x86_64.whl size=1253962 sha256=d8d160c302e0f394f328492c19cd8ccec591bf550cc8c72d065197c32f056195 Stored in directory: /root/.cache/pip/wheels/27/51/b3/3481e88d5a5ba95dd4aafedc9316774d941c4ba61cfb93add8 Building wheel for sqlalchemy-utils (setup.py): started Building wheel for sqlalchemy-utils (setup.py): finished with status 'done' Created wheel for sqlalchemy-utils: filename=SQLAlchemy_Utils-0.36.5-py2.py3-none-any.whl size=93147 sha256=6b284a64081bce5bc1cb4ca82506aae2acd101f58739a915b9507d9c34abe3c7 Stored in directory: /root/.cache/pip/wheels/6f/fc/39/370f72b980d5642b8f7e0fdd0dceba400e1d015e9c30468ce8 Building wheel for wrapt (setup.py): started Building wheel for wrapt (setup.py): finished with status 'done' Created wheel for wrapt: filename=wrapt-1.11.2-cp310-cp310-linux_x86_64.whl size=71550 sha256=1becfcdfad67959d66e42a7df4d8312c475664f027fd8169597f6765473e31f0 Stored in directory: /root/.cache/pip/wheels/52/c4/b2/401bb0f4c0e950a9066cbc424cc87c6e771a781bcb05a1683b Building wheel for configobj (setup.py): started Building wheel for configobj (setup.py): finished with status 'done' Created wheel for configobj: filename=configobj-5.0.6-py3-none-any.whl size=34547 sha256=357ce6121706788c13e1ab64cfff67c7d011145140fd259d57a9afd3cf3c6e36 Stored in directory: /root/.cache/pip/wheels/90/cd/58/816b023d3eb0e2c9c6e0cd834a10a53e932e29d7c719298216 Successfully built aiida-cp2k click-completion ete3 pgsu psycopg2-binary pyyaml regex sqlalchemy sqlalchemy-utils wrapt configobj Installing collected packages: wrapt, wcwidth, upf-to-json, regex, pytz, ptyprocess, pickleshare, pamqp, iniconfig, ete3, click-spinner, backcall, asn1crypto, tzlocal, typing-extensions, traitlets, tqdm, tornado, toml, tabulate, sqlparse, sqlalchemy, six, simplejson, shortuuid, shellingham, scramp, ruamel.yaml.clib, pyzmq, pyyaml, pyrsistent, pyparsing, pygments, pycparser, py, psycopg2-binary, psutil, prompt-toolkit, pluggy, pillow, pexpect, parso, numpy, nest-asyncio, multidict, markupsafe, kiwisolver, idna, graphviz, fonttools, decorator, cycler, coverage, click, bcrypt, attrs, async-generator, archive-path, yarl, transitions, sqlalchemy-utils, scipy, ruamel.yaml, reentry, python-dateutil, pydantic, pgsu, pg8000, packaging, matplotlib-inline, Mako, jsonschema, jinja2, jedi, django, cp2k-output-tools, contourpy, configobj, circus, cffi, aldjemy, pytest, pynacl, pint, pgtest, matplotlib, ipython, deprecation, cryptography, click-config-file, click-completion, alembic, aiormq, pytray, pytest-cov, paramiko, cp2k-input-tools, ase, aio-pika, kiwipy, plumpy, aiida-core, aiida-gaussian-datatypes, aiida-cp2k Successfully installed Mako-1.2.3 aiida-core-1.6.9 aiida-cp2k-1.5.0 aiida-gaussian-datatypes-0.5.1 aio-pika-6.8.1 aiormq-3.3.1 aldjemy-0.9.1 alembic-1.8.1 archive-path-0.2.1 ase-3.22.1 asn1crypto-1.5.1 async-generator-1.10 attrs-22.1.0 backcall-0.2.0 bcrypt-4.0.0 cffi-1.15.1 circus-0.17.1 click-7.1.2 click-completion-0.5.2 click-config-file-0.6.0 click-spinner-0.1.10 configobj-5.0.6 contourpy-1.0.5 coverage-6.5.0 cp2k-input-tools-0.8.2 cp2k-output-tools-0.3.1 cryptography-38.0.1 cycler-0.11.0 decorator-5.1.1 deprecation-2.1.0 django-2.2.28 ete3-3.1.2 fonttools-4.37.4 graphviz-0.20.1 idna-3.4 iniconfig-1.1.1 ipython-7.34.0 jedi-0.18.1 jinja2-2.11.3 jsonschema-3.2.0 kiwipy-0.7.6 kiwisolver-1.4.4 markupsafe-2.0.1 matplotlib-3.6.0 matplotlib-inline-0.1.6 multidict-6.0.2 nest-asyncio-1.4.3 numpy-1.23.3 packaging-21.3 pamqp-2.3.0 paramiko-2.11.0 parso-0.8.3 pexpect-4.8.0 pg8000-1.29.1 pgsu-0.2.2 pgtest-1.3.2 pickleshare-0.7.5 pillow-9.2.0 pint-0.17 pluggy-1.0.0 plumpy-0.20.0 prompt-toolkit-3.0.31 psutil-5.9.2 psycopg2-binary-2.8.6 ptyprocess-0.7.0 py-1.11.0 pycparser-2.21 pydantic-1.10.2 pygments-2.13.0 pynacl-1.5.0 pyparsing-3.0.9 pyrsistent-0.18.1 pytest-6.2.5 pytest-cov-2.11.1 python-dateutil-2.8.2 pytray-0.3.2 pytz-2019.3 pyyaml-5.4.1 pyzmq-24.0.1 reentry-1.3.3 regex-2020.11.13 ruamel.yaml-0.17.21 ruamel.yaml.clib-0.2.6 scipy-1.9.1 scramp-1.4.1 shellingham-1.5.0 shortuuid-1.0.9 simplejson-3.17.6 six-1.16.0 sqlalchemy-1.3.24 sqlalchemy-utils-0.36.5 sqlparse-0.4.3 tabulate-0.8.10 toml-0.10.2 tornado-6.2 tqdm-4.64.1 traitlets-5.4.0 transitions-0.7.2 typing-extensions-4.3.0 tzlocal-2.1 upf-to-json-0.9.5 wcwidth-0.2.5 wrapt-1.11.2 yarl-1.8.1 WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv ========== Configuring AiiDA ========== * Starting RabbitMQ Messaging Server rabbitmq-server ...done. * Starting PostgreSQL 14 database server ...done. ========== Running AiiDA-CP2K Tests ========== ============================= test session starts ============================== platform linux -- Python 3.10.6, pytest-6.2.5, py-1.11.0, pluggy-1.0.0 rootdir: /opt/aiida-cp2k, configfile: pyproject.toml plugins: cov-2.11.1 collected 37 items examples/gaussian_datatypes/example_automatic.py . [ 2%] examples/gaussian_datatypes/example_explicit.py . [ 5%] examples/single_calculations/example_bands.py . [ 8%] examples/single_calculations/example_dft.py . [ 10%] examples/single_calculations/example_dft_atomic_kinds.py . [ 13%] examples/single_calculations/example_failure.py . [ 16%] examples/single_calculations/example_geopt.py . [ 18%] examples/single_calculations/example_mm.py . [ 21%] examples/single_calculations/example_multiple_force_eval.py . [ 24%] examples/single_calculations/example_no_struct.py . [ 27%] examples/single_calculations/example_precision.py . [ 29%] examples/single_calculations/example_restart.py . [ 32%] examples/single_calculations/example_structure_through_file.py . [ 35%] examples/workchains/example_base_failed_restart.py . [ 37%] examples/workchains/example_base_restart.py . [ 40%] test/test_gaussian_datatypes.py ........ [ 62%] test/test_input_generator.py ......... [ 86%] test/test_parser.py ... [ 94%] test/test_version_agreement.py . [ 97%] test/test_xyz.py . [100%] =============================== warnings summary =============================== ../../usr/local/lib/python3.10/dist-packages/_pytest/cacheprovider.py:428 /usr/local/lib/python3.10/dist-packages/_pytest/cacheprovider.py:428: PytestCacheWarning: could not create cache path /opt/aiida-cp2k/.pytest_cache/v/cache/nodeids config.cache.set("cache/nodeids", sorted(self.cached_nodeids)) ../../usr/local/lib/python3.10/dist-packages/_pytest/stepwise.py:49 /usr/local/lib/python3.10/dist-packages/_pytest/stepwise.py:49: PytestCacheWarning: could not create cache path /opt/aiida-cp2k/.pytest_cache/v/cache/stepwise session.config.cache.set(STEPWISE_CACHE_DIR, []) -- Docs: https://docs.pytest.org/en/stable/warnings.html ================== 37 passed, 2 warnings in 284.14s (0:04:44) ================== Summary: aiida-cp2k commit 7cf6d76 works fine. Status: OK Removing intermediate container 66126f91fb58 ---> dee17e05c7d9 Step 40/41 : CMD cat $(find ./report.log -mmin +10) | sed '/^Summary:/ s/$/ (cached)/' ---> Running in facec84d28ab Removing intermediate container facec84d28ab ---> ea0310e3bf82 Step 41/41 : ENTRYPOINT [] ---> Running in 493883b74b49 Removing intermediate container 493883b74b49 ---> b8a38e25e6c8 [Warning] One or more build-args [GIT_COMMIT_SHA] were not consumed Successfully built b8a38e25e6c8 Successfully tagged gcr.io/cp2k-org-project/img_cp2k-aiida-arch-668:master Pushing new image... done. #################### Running Image cp2k-aiida #################### EndDate: 2022-10-01 11:17:18+00:00