StartDate: 2020-02-19 19:03:39+00:00 CpuId: 16x Intel Core i7-5000 Extreme Edition (Haswell R2) / Xeon E5-x600 / Xeon E5-4800 / Xeon E5-8800 v3 (Haswell-EP), 22nm CommitSHA: 26675c831e1a8448c8cd6ab0d75aa144c42e8967 CommitTime: 2020-02-19 14:47:33 +0100 CommitAuthor: Ole Schütt CommitSubject: docker: Set OMP_NUM_THREADS in i-PI test Trying to pull image cp2k-toolchain-mpich... success :-) Trying to pull image cp2k-aiida... image not found. #################### Building Image cp2k-aiida #################### Dockerfile: /tools/docker/Dockerfile.test_aiida Build-Args: TOOLCHAIN=gcr.io/cp2k-org-project/img_cp2k-toolchain-mpich-arch-132:gittree-d3691ee-buildargs-68b329d Sending build context to Docker daemon 74.24kB Step 1/10 : ARG TOOLCHAIN=cp2k/toolchain:latest Step 2/10 : FROM ${TOOLCHAIN} ---> 2d9cade4039a Step 3/10 : WORKDIR /workspace ---> Running in edde6a7d8ebe Removing intermediate container edde6a7d8ebe ---> d5e256ef5ef4 Step 4/10 : COPY ./scripts/install_basics.sh . ---> 8d411ba1c700 Step 5/10 : RUN ./install_basics.sh ---> Running in f225ab0c8041 debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpopt0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13917 files and directories currently installed.) Preparing to unpack .../libpopt0_1.16-11_amd64.deb ... Unpacking libpopt0:amd64 (1.16-11) ... Selecting previously unselected package locales. Preparing to unpack .../locales_2.27-3ubuntu1_all.deb ... Unpacking locales (2.27-3ubuntu1) ... Selecting previously unselected package rsync. Preparing to unpack .../rsync_3.1.2-2.1ubuntu1_amd64.deb ... Unpacking rsync (3.1.2-2.1ubuntu1) ... Setting up libpopt0:amd64 (1.16-11) ... Setting up rsync (3.1.2-2.1ubuntu1) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of restart. Setting up locales (2.27-3ubuntu1) ... debconf: unable to initialize frontend: Dialog debconf: (TERM is not set, so the dialog frontend is not usable.) debconf: falling back to frontend: Readline Generating locales (this might take a while)... Generation complete. Processing triggers for libc-bin (2.27-3ubuntu1) ... Generating locales (this might take a while)... en_US.UTF-8... done Generation complete. Removing intermediate container f225ab0c8041 ---> 332f2dc892db Step 6/10 : ENV LANG="en_US.UTF-8" LANGUAGE="en_US:en" LC_ALL="en_US.UTF-8" ---> Running in 91cb0835c42b Removing intermediate container 91cb0835c42b ---> 23fdec4a5b84 Step 7/10 : COPY ./scripts/install_aiida.sh . ---> c978c3694fdf Step 8/10 : RUN ./install_aiida.sh ---> Running in 3f4ceff33fa3 debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package cron. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14571 files and directories currently installed.) Preparing to unpack .../00-cron_3.0pl1-128.1ubuntu1_amd64.deb ... Unpacking cron (3.0pl1-128.1ubuntu1) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../01-libbsd0_0.8.7-1ubuntu0.1_amd64.deb ... Unpacking libbsd0:amd64 (0.8.7-1ubuntu0.1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../02-libedit2_3.1-20170329-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20170329-1) ... Selecting previously unselected package libssl1.0.0:amd64. Preparing to unpack .../03-libssl1.0.0_1.0.2n-1ubuntu5.3_amd64.deb ... Unpacking libssl1.0.0:amd64 (1.0.2n-1ubuntu5.3) ... Selecting previously unselected package openssh-client. Preparing to unpack .../04-openssh-client_1%3a7.6p1-4ubuntu0.3_amd64.deb ... Unpacking openssh-client (1:7.6p1-4ubuntu0.3) ... Selecting previously unselected package openssh-sftp-server. Preparing to unpack .../05-openssh-sftp-server_1%3a7.6p1-4ubuntu0.3_amd64.deb ... Unpacking openssh-sftp-server (1:7.6p1-4ubuntu0.3) ... Selecting previously unselected package ucf. Preparing to unpack .../06-ucf_3.0038_all.deb ... Moving old data out of the way Unpacking ucf (3.0038) ... Selecting previously unselected package libwrap0:amd64. Preparing to unpack .../07-libwrap0_7.6.q-27_amd64.deb ... Unpacking libwrap0:amd64 (7.6.q-27) ... Selecting previously unselected package openssh-server. Preparing to unpack .../08-openssh-server_1%3a7.6p1-4ubuntu0.3_amd64.deb ... Unpacking openssh-server (1:7.6p1-4ubuntu0.3) ... Selecting previously unselected package ssh. Preparing to unpack .../09-ssh_1%3a7.6p1-4ubuntu0.3_all.deb ... Unpacking ssh (1:7.6p1-4ubuntu0.3) ... Selecting previously unselected package logrotate. Preparing to unpack .../10-logrotate_3.11.0-0.1ubuntu1_amd64.deb ... Unpacking logrotate (3.11.0-0.1ubuntu1) ... Selecting previously unselected package netbase. Preparing to unpack .../11-netbase_5.4_all.deb ... Unpacking netbase (5.4) ... Selecting previously unselected package sudo. Preparing to unpack .../12-sudo_1.8.21p2-3ubuntu1.2_amd64.deb ... Unpacking sudo (1.8.21p2-3ubuntu1.2) ... Selecting previously unselected package tzdata. Preparing to unpack .../13-tzdata_2019c-0ubuntu0.18.04_all.deb ... Unpacking tzdata (2019c-0ubuntu0.18.04) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../14-python3-lib2to3_3.6.9-1~18.04_all.deb ... Unpacking python3-lib2to3 (3.6.9-1~18.04) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../15-python3-distutils_3.6.9-1~18.04_all.deb ... Unpacking python3-distutils (3.6.9-1~18.04) ... Selecting previously unselected package dh-python. Preparing to unpack .../16-dh-python_3.20180325ubuntu2_all.deb ... Unpacking dh-python (3.20180325ubuntu2) ... Selecting previously unselected package erlang-base. Preparing to unpack .../17-erlang-base_1%3a20.2.2+dfsg-1ubuntu2_amd64.deb ... Unpacking erlang-base (1:20.2.2+dfsg-1ubuntu2) ... Selecting previously unselected package erlang-asn1. Preparing to unpack .../18-erlang-asn1_1%3a20.2.2+dfsg-1ubuntu2_amd64.deb ... Unpacking erlang-asn1 (1:20.2.2+dfsg-1ubuntu2) ... Selecting previously unselected package erlang-mnesia. Preparing to unpack .../19-erlang-mnesia_1%3a20.2.2+dfsg-1ubuntu2_amd64.deb ... Unpacking erlang-mnesia (1:20.2.2+dfsg-1ubuntu2) ... Selecting previously unselected package erlang-runtime-tools. Preparing to unpack .../20-erlang-runtime-tools_1%3a20.2.2+dfsg-1ubuntu2_amd64.deb ... Unpacking erlang-runtime-tools (1:20.2.2+dfsg-1ubuntu2) ... Selecting previously unselected package erlang-crypto. Preparing to unpack .../21-erlang-crypto_1%3a20.2.2+dfsg-1ubuntu2_amd64.deb ... Unpacking erlang-crypto (1:20.2.2+dfsg-1ubuntu2) ... Selecting previously unselected package erlang-public-key. Preparing to unpack .../22-erlang-public-key_1%3a20.2.2+dfsg-1ubuntu2_amd64.deb ... Unpacking erlang-public-key (1:20.2.2+dfsg-1ubuntu2) ... Selecting previously unselected package erlang-ssl. Preparing to unpack .../23-erlang-ssl_1%3a20.2.2+dfsg-1ubuntu2_amd64.deb ... Unpacking erlang-ssl (1:20.2.2+dfsg-1ubuntu2) ... Selecting previously unselected package erlang-inets. Preparing to unpack .../24-erlang-inets_1%3a20.2.2+dfsg-1ubuntu2_amd64.deb ... Unpacking erlang-inets (1:20.2.2+dfsg-1ubuntu2) ... Selecting previously unselected package erlang-corba. Preparing to unpack .../25-erlang-corba_1%3a20.2.2+dfsg-1ubuntu2_amd64.deb ... Unpacking erlang-corba (1:20.2.2+dfsg-1ubuntu2) ... Selecting previously unselected package erlang-syntax-tools. Preparing to unpack .../26-erlang-syntax-tools_1%3a20.2.2+dfsg-1ubuntu2_amd64.deb ... Unpacking erlang-syntax-tools (1:20.2.2+dfsg-1ubuntu2) ... Selecting previously unselected package erlang-diameter. Preparing to unpack .../27-erlang-diameter_1%3a20.2.2+dfsg-1ubuntu2_amd64.deb ... Unpacking erlang-diameter (1:20.2.2+dfsg-1ubuntu2) ... Selecting previously unselected package erlang-xmerl. Preparing to unpack .../28-erlang-xmerl_1%3a20.2.2+dfsg-1ubuntu2_amd64.deb ... Unpacking erlang-xmerl (1:20.2.2+dfsg-1ubuntu2) ... Selecting previously unselected package erlang-edoc. Preparing to unpack .../29-erlang-edoc_1%3a20.2.2+dfsg-1ubuntu2_amd64.deb ... Unpacking erlang-edoc (1:20.2.2+dfsg-1ubuntu2) ... Selecting previously unselected package erlang-eldap. Preparing to unpack .../30-erlang-eldap_1%3a20.2.2+dfsg-1ubuntu2_amd64.deb ... Unpacking erlang-eldap (1:20.2.2+dfsg-1ubuntu2) ... Selecting previously unselected package erlang-erl-docgen. Preparing to unpack .../31-erlang-erl-docgen_1%3a20.2.2+dfsg-1ubuntu2_amd64.deb ... Unpacking erlang-erl-docgen (1:20.2.2+dfsg-1ubuntu2) ... Selecting previously unselected package erlang-eunit. Preparing to unpack .../32-erlang-eunit_1%3a20.2.2+dfsg-1ubuntu2_amd64.deb ... Unpacking erlang-eunit (1:20.2.2+dfsg-1ubuntu2) ... Selecting previously unselected package erlang-ic. Preparing to unpack .../33-erlang-ic_1%3a20.2.2+dfsg-1ubuntu2_amd64.deb ... Unpacking erlang-ic (1:20.2.2+dfsg-1ubuntu2) ... Selecting previously unselected package libodbc1:amd64. Preparing to unpack .../34-libodbc1_2.3.4-1.1ubuntu3_amd64.deb ... Unpacking libodbc1:amd64 (2.3.4-1.1ubuntu3) ... Selecting previously unselected package erlang-odbc. Preparing to unpack .../35-erlang-odbc_1%3a20.2.2+dfsg-1ubuntu2_amd64.deb ... Unpacking erlang-odbc (1:20.2.2+dfsg-1ubuntu2) ... Selecting previously unselected package erlang-snmp. Preparing to unpack .../36-erlang-snmp_1%3a20.2.2+dfsg-1ubuntu2_amd64.deb ... Unpacking erlang-snmp (1:20.2.2+dfsg-1ubuntu2) ... Selecting previously unselected package erlang-os-mon. Preparing to unpack .../37-erlang-os-mon_1%3a20.2.2+dfsg-1ubuntu2_amd64.deb ... Unpacking erlang-os-mon (1:20.2.2+dfsg-1ubuntu2) ... Selecting previously unselected package erlang-parsetools. Preparing to unpack .../38-erlang-parsetools_1%3a20.2.2+dfsg-1ubuntu2_amd64.deb ... Unpacking erlang-parsetools (1:20.2.2+dfsg-1ubuntu2) ... Selecting previously unselected package erlang-ssh. Preparing to unpack .../39-erlang-ssh_1%3a20.2.2+dfsg-1ubuntu2_amd64.deb ... Unpacking erlang-ssh (1:20.2.2+dfsg-1ubuntu2) ... Selecting previously unselected package erlang-tools. Preparing to unpack .../40-erlang-tools_1%3a20.2.2+dfsg-1ubuntu2_amd64.deb ... Unpacking erlang-tools (1:20.2.2+dfsg-1ubuntu2) ... Selecting previously unselected package erlang-nox. Preparing to unpack .../41-erlang-nox_1%3a20.2.2+dfsg-1ubuntu2_all.deb ... Unpacking erlang-nox (1:20.2.2+dfsg-1ubuntu2) ... Selecting previously unselected package libexpat1-dev:amd64. Preparing to unpack .../42-libexpat1-dev_2.2.5-3ubuntu0.2_amd64.deb ... Unpacking libexpat1-dev:amd64 (2.2.5-3ubuntu0.2) ... Selecting previously unselected package libpq5:amd64. Preparing to unpack .../43-libpq5_10.12-0ubuntu0.18.04.1_amd64.deb ... Unpacking libpq5:amd64 (10.12-0ubuntu0.18.04.1) ... Selecting previously unselected package libpython3.6:amd64. Preparing to unpack .../44-libpython3.6_3.6.9-1~18.04_amd64.deb ... Unpacking libpython3.6:amd64 (3.6.9-1~18.04) ... Selecting previously unselected package libpython3.6-dev:amd64. Preparing to unpack .../45-libpython3.6-dev_3.6.9-1~18.04_amd64.deb ... Unpacking libpython3.6-dev:amd64 (3.6.9-1~18.04) ... Selecting previously unselected package libpython3-dev:amd64. Preparing to unpack .../46-libpython3-dev_3.6.7-1~18.04_amd64.deb ... Unpacking libpython3-dev:amd64 (3.6.7-1~18.04) ... Selecting previously unselected package libxslt1.1:amd64. Preparing to unpack .../47-libxslt1.1_1.1.29-5ubuntu0.2_amd64.deb ... Unpacking libxslt1.1:amd64 (1.1.29-5ubuntu0.2) ... Selecting previously unselected package postgresql-client-common. Preparing to unpack .../48-postgresql-client-common_190ubuntu0.1_all.deb ... Unpacking postgresql-client-common (190ubuntu0.1) ... Selecting previously unselected package postgresql-client-10. Preparing to unpack .../49-postgresql-client-10_10.12-0ubuntu0.18.04.1_amd64.deb ... Unpacking postgresql-client-10 (10.12-0ubuntu0.18.04.1) ... Selecting previously unselected package ssl-cert. Preparing to unpack .../50-ssl-cert_1.0.39_all.deb ... Unpacking ssl-cert (1.0.39) ... Selecting previously unselected package postgresql-common. Preparing to unpack .../51-postgresql-common_190ubuntu0.1_all.deb ... Adding 'diversion of /usr/bin/pg_config to /usr/bin/pg_config.libpq-dev by postgresql-common' Unpacking postgresql-common (190ubuntu0.1) ... Selecting previously unselected package postgresql-10. Preparing to unpack .../52-postgresql-10_10.12-0ubuntu0.18.04.1_amd64.deb ... Unpacking postgresql-10 (10.12-0ubuntu0.18.04.1) ... Selecting previously unselected package postgresql. Preparing to unpack .../53-postgresql_10+190ubuntu0.1_all.deb ... Unpacking postgresql (10+190ubuntu0.1) ... Selecting previously unselected package python-pip-whl. Preparing to unpack .../54-python-pip-whl_9.0.1-2.3~ubuntu1.18.04.1_all.deb ... Unpacking python-pip-whl (9.0.1-2.3~ubuntu1.18.04.1) ... Selecting previously unselected package python3.6-dev. Preparing to unpack .../55-python3.6-dev_3.6.9-1~18.04_amd64.deb ... Unpacking python3.6-dev (3.6.9-1~18.04) ... Selecting previously unselected package python3-dev. Preparing to unpack .../56-python3-dev_3.6.7-1~18.04_amd64.deb ... Unpacking python3-dev (3.6.7-1~18.04) ... Selecting previously unselected package python3-pip. Preparing to unpack .../57-python3-pip_9.0.1-2.3~ubuntu1.18.04.1_all.deb ... Unpacking python3-pip (9.0.1-2.3~ubuntu1.18.04.1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../58-python3-pkg-resources_39.0.1-2_all.deb ... Unpacking python3-pkg-resources (39.0.1-2) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../59-python3-setuptools_39.0.1-2_all.deb ... Unpacking python3-setuptools (39.0.1-2) ... Selecting previously unselected package python3-wheel. Preparing to unpack .../60-python3-wheel_0.30.0-0.2_all.deb ... Unpacking python3-wheel (0.30.0-0.2) ... Selecting previously unselected package rabbitmq-server. Preparing to unpack .../61-rabbitmq-server_3.6.10-1_all.deb ... Unpacking rabbitmq-server (3.6.10-1) ... Setting up libedit2:amd64 (3.1-20170329-1) ... Setting up python-pip-whl (9.0.1-2.3~ubuntu1.18.04.1) ... Setting up libodbc1:amd64 (2.3.4-1.1ubuntu3) ... Setting up libssl1.0.0:amd64 (1.0.2n-1ubuntu5.3) ... Setting up erlang-base (1:20.2.2+dfsg-1ubuntu2) ... Searching for services which depend on erlang and should be started...none found. Setting up sudo (1.8.21p2-3ubuntu1.2) ... Setting up erlang-ic (1:20.2.2+dfsg-1ubuntu2) ... Setting up tzdata (2019c-0ubuntu0.18.04) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Feb 19 19:08:10 UTC 2020. Universal Time is now: Wed Feb 19 19:08:10 UTC 2020. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up erlang-xmerl (1:20.2.2+dfsg-1ubuntu2) ... Setting up ssl-cert (1.0.39) ... Setting up python3-wheel (0.30.0-0.2) ... Setting up python3-pkg-resources (39.0.1-2) ... Setting up libbsd0:amd64 (0.8.7-1ubuntu0.1) ... Setting up ucf (3.0038) ... Setting up erlang-crypto (1:20.2.2+dfsg-1ubuntu2) ... Setting up libxslt1.1:amd64 (1.1.29-5ubuntu0.2) ... Setting up erlang-asn1 (1:20.2.2+dfsg-1ubuntu2) ... Setting up erlang-mnesia (1:20.2.2+dfsg-1ubuntu2) ... Setting up erlang-eunit (1:20.2.2+dfsg-1ubuntu2) ... Setting up libpq5:amd64 (10.12-0ubuntu0.18.04.1) ... Setting up libexpat1-dev:amd64 (2.2.5-3ubuntu0.2) ... Setting up erlang-runtime-tools (1:20.2.2+dfsg-1ubuntu2) ... Setting up erlang-syntax-tools (1:20.2.2+dfsg-1ubuntu2) ... Setting up erlang-odbc (1:20.2.2+dfsg-1ubuntu2) ... Setting up python3-lib2to3 (3.6.9-1~18.04) ... Setting up openssh-client (1:7.6p1-4ubuntu0.3) ... Setting up cron (3.0pl1-128.1ubuntu1) ... Adding group `crontab' (GID 104) ... Done. update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up python3-distutils (3.6.9-1~18.04) ... Setting up logrotate (3.11.0-0.1ubuntu1) ... Setting up libwrap0:amd64 (7.6.q-27) ... Setting up libpython3.6:amd64 (3.6.9-1~18.04) ... Setting up netbase (5.4) ... Setting up erlang-parsetools (1:20.2.2+dfsg-1ubuntu2) ... Setting up erlang-public-key (1:20.2.2+dfsg-1ubuntu2) ... Setting up libpython3.6-dev:amd64 (3.6.9-1~18.04) ... Setting up erlang-snmp (1:20.2.2+dfsg-1ubuntu2) ... Setting up erlang-ssl (1:20.2.2+dfsg-1ubuntu2) ... Setting up erlang-inets (1:20.2.2+dfsg-1ubuntu2) ... Setting up openssh-sftp-server (1:7.6p1-4ubuntu0.3) ... Setting up postgresql-client-common (190ubuntu0.1) ... Setting up erlang-tools (1:20.2.2+dfsg-1ubuntu2) ... Setting up postgresql-common (190ubuntu0.1) ... Adding user postgres to group ssl-cert Creating config file /etc/postgresql-common/createcluster.conf with new version Building PostgreSQL dictionaries from installed myspell/hunspell packages... Removing obsolete dictionary files: invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up python3-pip (9.0.1-2.3~ubuntu1.18.04.1) ... Setting up python3-setuptools (39.0.1-2) ... Setting up python3.6-dev (3.6.9-1~18.04) ... Setting up dh-python (3.20180325ubuntu2) ... Setting up postgresql-client-10 (10.12-0ubuntu0.18.04.1) ... update-alternatives: using /usr/share/postgresql/10/man/man1/psql.1.gz to provide /usr/share/man/man1/psql.1.gz (psql.1.gz) in auto mode Setting up libpython3-dev:amd64 (3.6.7-1~18.04) ... Setting up erlang-diameter (1:20.2.2+dfsg-1ubuntu2) ... Setting up erlang-ssh (1:20.2.2+dfsg-1ubuntu2) ... Setting up erlang-os-mon (1:20.2.2+dfsg-1ubuntu2) ... Setting up erlang-eldap (1:20.2.2+dfsg-1ubuntu2) ... Setting up python3-dev (3.6.7-1~18.04) ... Setting up postgresql-10 (10.12-0ubuntu0.18.04.1) ... Creating new PostgreSQL cluster 10/main ... /usr/lib/postgresql/10/bin/initdb -D /var/lib/postgresql/10/main --auth-local peer --auth-host md5 The files belonging to this database system will be owned by user "postgres". This user must also own the server process. The database cluster will be initialized with locale "C.UTF-8". The default database encoding has accordingly been set to "UTF8". The default text search configuration will be set to "english". Data page checksums are disabled. fixing permissions on existing directory /var/lib/postgresql/10/main ... ok creating subdirectories ... ok selecting default max_connections ... 100 selecting default shared_buffers ... 128MB selecting default timezone ... Etc/UTC selecting dynamic shared memory implementation ... posix creating configuration files ... ok running bootstrap script ... ok performing post-bootstrap initialization ... ok syncing data to disk ... ok Success. You can now start the database server using: /usr/lib/postgresql/10/bin/pg_ctl -D /var/lib/postgresql/10/main -l logfile start Ver Cluster Port Status Owner Data directory Log file 10 main 5432 down postgres /var/lib/postgresql/10/main /var/log/postgresql/postgresql-10-main.log update-alternatives: using /usr/share/postgresql/10/man/man1/postmaster.1.gz to provide /usr/share/man/man1/postmaster.1.gz (postmaster.1.gz) in auto mode invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up erlang-edoc (1:20.2.2+dfsg-1ubuntu2) ... Setting up erlang-corba (1:20.2.2+dfsg-1ubuntu2) ... Setting up openssh-server (1:7.6p1-4ubuntu0.3) ... Creating config file /etc/ssh/sshd_config with new version Creating SSH2 RSA key; this may take some time ... 2048 SHA256:11GxhCqkfIDEbEt9pNqWN3rFn2H7TN3CxiTHeubSrMY root@3f4ceff33fa3 (RSA) Creating SSH2 ECDSA key; this may take some time ... 256 SHA256:KZs2QbZSji97+vZD5NAsdAJhKX4AMlWL9xl7h8adicM root@3f4ceff33fa3 (ECDSA) Creating SSH2 ED25519 key; this may take some time ... 256 SHA256:wbYRycepUznuB68Nz7S2PuUA2cZHt1umC4RpzKkeiy8 root@3f4ceff33fa3 (ED25519) invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up postgresql (10+190ubuntu0.1) ... Setting up erlang-erl-docgen (1:20.2.2+dfsg-1ubuntu2) ... Setting up erlang-nox (1:20.2.2+dfsg-1ubuntu2) ... Setting up ssh (1:7.6p1-4ubuntu0.3) ... Setting up rabbitmq-server (3.6.10-1) ... Adding group `rabbitmq' (GID 106) ... Done. Adding system user `rabbitmq' (UID 104) ... Adding new user `rabbitmq' (UID 104) with group `rabbitmq' ... Not creating home directory `/var/lib/rabbitmq'. invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Processing triggers for libc-bin (2.27-3ubuntu1) ... Adding user `ubuntu' ... Adding new group `ubuntu' (1000) ... Adding new user `ubuntu' (1000) with group `ubuntu' ... Creating home directory `/home/ubuntu' ... Copying files from `/etc/skel' ... './local_coverage.pdbg' -> '/opt/cp2k-toolchain/install/arch/local_coverage.pdbg' './local_coverage.sdbg' -> '/opt/cp2k-toolchain/install/arch/local_coverage.sdbg' './local.pdbg' -> '/opt/cp2k-toolchain/install/arch/local.pdbg' './local.popt' -> '/opt/cp2k-toolchain/install/arch/local.popt' './local.psmp' -> '/opt/cp2k-toolchain/install/arch/local.psmp' './local.sdbg' -> '/opt/cp2k-toolchain/install/arch/local.sdbg' './local.sopt' -> '/opt/cp2k-toolchain/install/arch/local.sopt' './local.ssmp' -> '/opt/cp2k-toolchain/install/arch/local.ssmp' './local_valgrind.popt' -> '/opt/cp2k-toolchain/install/arch/local_valgrind.popt' './local_valgrind.sopt' -> '/opt/cp2k-toolchain/install/arch/local_valgrind.sopt' './local_warn.psmp' -> '/opt/cp2k-toolchain/install/arch/local_warn.psmp' Warming cache by trying to compile... done. Removing intermediate container 3f4ceff33fa3 ---> 70671353b6d3 Step 9/10 : COPY ./scripts/ci_entrypoint.sh ./scripts/test_aiida.sh ./ ---> ad18ebf418c4 Step 10/10 : CMD ["./ci_entrypoint.sh", "./test_aiida.sh"] ---> Running in 4d0978cb049d Removing intermediate container 4d0978cb049d ---> c8cd566c672c Successfully built c8cd566c672c Successfully tagged gcr.io/cp2k-org-project/img_cp2k-aiida-arch-132:gittree-6fc539c-buildargs-93a4719 Pushing image cp2k-aiida... done. #################### Running Image cp2k-aiida #################### ========== Fetching Git Commit ========== CommitSHA: 26675c831e1a8448c8cd6ab0d75aa144c42e8967 CommitTime: 2020-02-19 14:47:33 +0100 CommitAuthor: Ole Schütt CommitSubject: docker: Set OMP_NUM_THREADS in i-PI test ========== Running Test ========== ========== Compiling CP2K ========== Compiling cp2k... done. ========== Installing AiiDA-CP2K plugin ========== Already up to date. Processing /opt/aiida-cp2k Requirement already satisfied: aiida-core<2.0.0,>=1.0.0 in /usr/local/lib/python3.6/dist-packages (from aiida-cp2k==1.0.0b5) Requirement already satisfied: ruamel.yaml>=0.16.5 in /usr/local/lib/python3.6/dist-packages (from aiida-cp2k==1.0.0b5) Requirement already satisfied: ase in /usr/local/lib/python3.6/dist-packages (from aiida-cp2k==1.0.0b5) Requirement already satisfied: coverage in /usr/local/lib/python3.6/dist-packages (from aiida-cp2k==1.0.0b5) Requirement already satisfied: pgtest==1.2.0 in /usr/local/lib/python3.6/dist-packages (from aiida-cp2k==1.0.0b5) Requirement already satisfied: pytest-cov<3.0.0,>=2.6.1 in /usr/local/lib/python3.6/dist-packages (from aiida-cp2k==1.0.0b5) Requirement already satisfied: pytest<5.0.0,>=4.4 in /usr/local/lib/python3.6/dist-packages (from aiida-cp2k==1.0.0b5) Requirement already satisfied: jinja2~=2.10 in /usr/local/lib/python3.6/dist-packages (from aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: ete3~=3.1 in /usr/local/lib/python3.6/dist-packages (from aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: sqlalchemy-utils~=0.34.2 in /usr/local/lib/python3.6/dist-packages (from aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: numpy<1.18,~=1.17 in /usr/local/lib/python3.6/dist-packages (from aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: click~=7.0 in /usr/local/lib/python3.6/dist-packages (from aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: tornado<5.0 in /usr/local/lib/python3.6/dist-packages (from aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: python-dateutil~=2.8 in /usr/local/lib/python3.6/dist-packages (from aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: plumpy~=0.14.5 in /usr/local/lib/python3.6/dist-packages (from aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: click-config-file~=0.5.0 in /usr/local/lib/python3.6/dist-packages (from aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: alembic~=1.2 in /usr/local/lib/python3.6/dist-packages (from aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: tabulate~=0.8.5 in /usr/local/lib/python3.6/dist-packages (from aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: graphviz~=0.13 in /usr/local/lib/python3.6/dist-packages (from aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: django~=2.2 in /usr/local/lib/python3.6/dist-packages (from aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: kiwipy[rmq]~=0.5.1 in /usr/local/lib/python3.6/dist-packages (from aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: reentry~=1.3 in /usr/local/lib/python3.6/dist-packages (from aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: click-completion~=0.5.1 in /usr/local/lib/python3.6/dist-packages (from aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: pyyaml~=5.1.2 in /usr/local/lib/python3.6/dist-packages (from aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: circus~=0.16.1 in /usr/local/lib/python3.6/dist-packages (from aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: upf-to-json~=0.9.2 in /usr/local/lib/python3.6/dist-packages (from aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: pytz~=2019.3 in /usr/local/lib/python3.6/dist-packages (from aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: pika~=1.1 in /usr/local/lib/python3.6/dist-packages (from aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: paramiko~=2.6 in /usr/local/lib/python3.6/dist-packages (from aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: tzlocal~=2.0 in /usr/local/lib/python3.6/dist-packages (from aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: psycopg2-binary>=2.8.3,~=2.8 in /usr/local/lib/python3.6/dist-packages (from aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: click-spinner~=0.1.8 in /usr/local/lib/python3.6/dist-packages (from aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: sqlalchemy>=1.3.10,~=1.3 in /usr/local/lib/python3.6/dist-packages (from aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: aldjemy~=0.9.1 in /usr/local/lib/python3.6/dist-packages (from aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: simplejson~=3.16 in /usr/local/lib/python3.6/dist-packages (from aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: psutil~=5.6 in /usr/local/lib/python3.6/dist-packages (from aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: wrapt~=1.11 in /usr/local/lib/python3.6/dist-packages (from aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: ipython~=7.0 in /usr/local/lib/python3.6/dist-packages (from aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: ruamel.yaml.clib>=0.1.2; platform_python_implementation == "CPython" and python_version < "3.9" in /usr/local/lib/python3.6/dist-packages (from ruamel.yaml>=0.16.5->aiida-cp2k==1.0.0b5) Requirement already satisfied: scipy in /usr/local/lib/python3.6/dist-packages (from ase->aiida-cp2k==1.0.0b5) Requirement already satisfied: matplotlib in /usr/local/lib/python3.6/dist-packages (from ase->aiida-cp2k==1.0.0b5) Requirement already satisfied: pg8000>=1.10 in /usr/local/lib/python3.6/dist-packages (from pgtest==1.2.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: pluggy<1.0,>=0.12 in /usr/local/lib/python3.6/dist-packages (from pytest<5.0.0,>=4.4->aiida-cp2k==1.0.0b5) Requirement already satisfied: py>=1.5.0 in /usr/local/lib/python3.6/dist-packages (from pytest<5.0.0,>=4.4->aiida-cp2k==1.0.0b5) Requirement already satisfied: wcwidth in /usr/local/lib/python3.6/dist-packages (from pytest<5.0.0,>=4.4->aiida-cp2k==1.0.0b5) Requirement already satisfied: atomicwrites>=1.0 in /usr/local/lib/python3.6/dist-packages (from pytest<5.0.0,>=4.4->aiida-cp2k==1.0.0b5) Requirement already satisfied: six>=1.10.0 in /usr/local/lib/python3.6/dist-packages (from pytest<5.0.0,>=4.4->aiida-cp2k==1.0.0b5) Requirement already satisfied: importlib-metadata>=0.12; python_version < "3.8" in /usr/local/lib/python3.6/dist-packages (from pytest<5.0.0,>=4.4->aiida-cp2k==1.0.0b5) Requirement already satisfied: attrs>=17.4.0 in /usr/local/lib/python3.6/dist-packages (from pytest<5.0.0,>=4.4->aiida-cp2k==1.0.0b5) Requirement already satisfied: packaging in /usr/local/lib/python3.6/dist-packages (from pytest<5.0.0,>=4.4->aiida-cp2k==1.0.0b5) Requirement already satisfied: more-itertools>=4.0.0; python_version > "2.7" in /usr/local/lib/python3.6/dist-packages (from pytest<5.0.0,>=4.4->aiida-cp2k==1.0.0b5) Requirement already satisfied: MarkupSafe>=0.23 in /usr/local/lib/python3.6/dist-packages (from jinja2~=2.10->aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: frozendict in /usr/local/lib/python3.6/dist-packages (from plumpy~=0.14.5->aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: configobj>=5.0.6 in /usr/local/lib/python3.6/dist-packages (from click-config-file~=0.5.0->aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: python-editor>=0.3 in /usr/local/lib/python3.6/dist-packages (from alembic~=1.2->aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: Mako in /usr/local/lib/python3.6/dist-packages (from alembic~=1.2->aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: sqlparse in /usr/local/lib/python3.6/dist-packages (from django~=2.2->aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: shortuuid in /usr/local/lib/python3.6/dist-packages (from kiwipy[rmq]~=0.5.1->aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: topika<0.3.0,>=0.2.0; extra == "rmq" in /usr/local/lib/python3.6/dist-packages (from kiwipy[rmq]~=0.5.1->aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: setuptools>=36.2 in /usr/lib/python3/dist-packages (from reentry~=1.3->aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: shellingham in /usr/local/lib/python3.6/dist-packages (from click-completion~=0.5.1->aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: pyzmq>=17.0 in /usr/local/lib/python3.6/dist-packages (from circus~=0.16.1->aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: cryptography>=2.5 in /usr/local/lib/python3.6/dist-packages (from paramiko~=2.6->aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: pynacl>=1.0.1 in /usr/local/lib/python3.6/dist-packages (from paramiko~=2.6->aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: bcrypt>=3.1.3 in /usr/local/lib/python3.6/dist-packages (from paramiko~=2.6->aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: jedi>=0.10 in /usr/local/lib/python3.6/dist-packages (from ipython~=7.0->aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: decorator in /usr/local/lib/python3.6/dist-packages (from ipython~=7.0->aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: pexpect; sys_platform != "win32" in /usr/local/lib/python3.6/dist-packages (from ipython~=7.0->aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: prompt-toolkit!=3.0.0,!=3.0.1,<3.1.0,>=2.0.0 in /usr/local/lib/python3.6/dist-packages (from ipython~=7.0->aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: pickleshare in /usr/local/lib/python3.6/dist-packages (from ipython~=7.0->aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: pygments in /usr/local/lib/python3.6/dist-packages (from ipython~=7.0->aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: traitlets>=4.2 in /usr/local/lib/python3.6/dist-packages (from ipython~=7.0->aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: backcall in /usr/local/lib/python3.6/dist-packages (from ipython~=7.0->aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: cycler>=0.10 in /usr/local/lib/python3.6/dist-packages (from matplotlib->ase->aiida-cp2k==1.0.0b5) Requirement already satisfied: kiwisolver>=1.0.1 in /usr/local/lib/python3.6/dist-packages (from matplotlib->ase->aiida-cp2k==1.0.0b5) Requirement already satisfied: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 in /usr/local/lib/python3.6/dist-packages (from matplotlib->ase->aiida-cp2k==1.0.0b5) Requirement already satisfied: scramp==1.1.0 in /usr/local/lib/python3.6/dist-packages (from pg8000>=1.10->pgtest==1.2.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: zipp>=0.5 in /usr/local/lib/python3.6/dist-packages (from importlib-metadata>=0.12; python_version < "3.8"->pytest<5.0.0,>=4.4->aiida-cp2k==1.0.0b5) Requirement already satisfied: furl in /usr/local/lib/python3.6/dist-packages (from topika<0.3.0,>=0.2.0; extra == "rmq"->kiwipy[rmq]~=0.5.1->aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: cffi!=1.11.3,>=1.8 in /usr/local/lib/python3.6/dist-packages (from cryptography>=2.5->paramiko~=2.6->aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: parso>=0.5.2 in /usr/local/lib/python3.6/dist-packages (from jedi>=0.10->ipython~=7.0->aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: ptyprocess>=0.5 in /usr/local/lib/python3.6/dist-packages (from pexpect; sys_platform != "win32"->ipython~=7.0->aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: ipython-genutils in /usr/local/lib/python3.6/dist-packages (from traitlets>=4.2->ipython~=7.0->aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: orderedmultidict>=1.0.1 in /usr/local/lib/python3.6/dist-packages (from furl->topika<0.3.0,>=0.2.0; extra == "rmq"->kiwipy[rmq]~=0.5.1->aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Requirement already satisfied: pycparser in /usr/local/lib/python3.6/dist-packages (from cffi!=1.11.3,>=1.8->cryptography>=2.5->paramiko~=2.6->aiida-core<2.0.0,>=1.0.0->aiida-cp2k==1.0.0b5) Building wheels for collected packages: aiida-cp2k Running setup.py bdist_wheel for aiida-cp2k: started Running setup.py bdist_wheel for aiida-cp2k: finished with status 'done' Stored in directory: /root/.cache/pip/wheels/11/e5/fd/978265bfb4d2d49f094507d7db0d16373283877dc99e63dadb Successfully built aiida-cp2k Installing collected packages: aiida-cp2k Successfully installed aiida-cp2k-1.0.0b5 ========== Configuring AiiDA ========== * Starting RabbitMQ Messaging Server rabbitmq-server ...done. * Starting PostgreSQL 10 database server ...done. CREATE ROLE CREATE DATABASE GRANT Success: created new profile `default`. Info: migrating the database. Operations to perform: Apply all migrations: auth, contenttypes, db Running migrations: Applying contenttypes.0001_initial... OK Applying contenttypes.0002_remove_content_type_name... OK Applying auth.0001_initial... OK Applying auth.0002_alter_permission_name_max_length... OK Applying auth.0003_alter_user_email_max_length... OK Applying auth.0004_alter_user_username_opts... OK Applying auth.0005_alter_user_last_login_null... OK Applying auth.0006_require_contenttypes_0002... OK Applying auth.0007_alter_validators_add_error_messages... OK Applying auth.0008_alter_user_username_max_length... OK Applying auth.0009_alter_user_last_name_max_length... OK Applying auth.0010_alter_group_name_max_length... OK Applying auth.0011_update_proxy_permissions... OK Applying db.0001_initial... OK Applying db.0002_db_state_change... OK Applying db.0003_add_link_type... OK Applying db.0004_add_daemon_and_uuid_indices... OK Applying db.0005_add_cmtime_indices... OK Applying db.0006_delete_dbpath... OK Applying db.0007_update_linktypes... OK Applying db.0008_code_hidden_to_extra... OK Applying db.0009_base_data_plugin_type_string... OK Applying db.0010_process_type... OK Applying db.0011_delete_kombu_tables... OK Applying db.0012_drop_dblock... OK Applying db.0013_django_1_8... OK Applying db.0014_add_node_uuid_unique_constraint... OK Applying db.0015_invalidating_node_hash... OK Applying db.0016_code_sub_class_of_data... OK Applying db.0017_drop_dbcalcstate... OK Applying db.0018_django_1_11... OK Applying db.0019_migrate_builtin_calculations... OK Applying db.0020_provenance_redesign... OK Applying db.0021_dbgroup_name_to_label_type_to_type_string... OK Applying db.0022_dbgroup_type_string_change_content... OK Applying db.0023_calc_job_option_attribute_keys... OK Applying db.0024_dblog_update... OK Applying db.0025_move_data_within_node_module... OK Applying db.0026_trajectory_symbols_to_attribute... OK Applying db.0027_delete_trajectory_symbols_array... OK Applying db.0028_remove_node_prefix... OK Applying db.0029_rename_parameter_data_to_dict... OK Applying db.0030_dbnode_type_to_dbnode_node_type... OK Applying db.0031_remove_dbcomputer_enabled... OK Applying db.0032_remove_legacy_workflows... OK Applying db.0033_replace_text_field_with_json_field... OK Applying db.0034_drop_node_columns_nodeversion_public... OK Applying db.0035_simplify_user_model... OK Applying db.0036_drop_computer_transport_params... OK Applying db.0037_attributes_extras_settings_json... OK Applying db.0038_data_migration_legacy_job_calculations... OK Applying db.0039_reset_hash... OK Applying db.0040_data_migration_legacy_process_attributes... OK Applying db.0041_seal_unsealed_processes... OK Applying db.0042_prepare_schema_reset... OK Applying db.0043_default_link_label... OK Success: database migration completed. Success: default set as default profile Starting the daemon... RUNNING Success: Computer<1> localhost created Info: Note: before the computer can be used, it has to be configured with the command: Info: verdi computer configure local localhost Info: Configuring computer localhost for user aiida@localhost. Success: localhost successfully configured for aiida@localhost Info: Testing computer for user... * Opening connection... [OK] * Checking for spurious output... [OK] * Getting number of jobs from scheduler... [OK]: 8 jobs found in the queue * Determining remote user name... [OK]: ubuntu * Creating and deleting temporary file... [OK] Success: all 5 tests succeeded Success: Code<1> cp2k@localhost created ========== Running AiiDA-CP2K Tests ========== ============================= test session starts ============================== platform linux -- Python 3.6.9, pytest-4.6.9, py-1.8.1, pluggy-0.13.1 rootdir: /opt/aiida-cp2k, inifile: pytest.ini plugins: cov-2.8.1 collected 28 items examples/single_calculations/example_dft.py . [ 3%] examples/single_calculations/example_dft_atomic_kinds.py . [ 7%] examples/single_calculations/example_failure.py . [ 10%] examples/single_calculations/example_geopt.py . [ 14%] examples/single_calculations/example_mm.py . [ 17%] examples/single_calculations/example_multiple_force_eval.py . [ 21%] examples/single_calculations/example_no_struct.py . [ 25%] examples/single_calculations/example_precision.py . [ 28%] examples/single_calculations/example_restart.py . [ 32%] examples/single_calculations/example_structure_through_file.py . [ 35%] examples/workchains/example_base.py . [ 39%] examples/workchains/example_multistage_Al.py . [ 42%] examples/workchains/example_multistage_h2o-.py . [ 46%] examples/workchains/example_multistage_h2o.py . [ 50%] examples/workchains/example_multistage_h2o_fail.py . [ 53%] examples/workchains/example_multistage_h2o_singlepoint.py . [ 57%] examples/workchains/example_multistage_h2o_testfile.py . [ 60%] test/test_input_generator.py ......... [ 92%] test/test_parsers.py . [ 96%] test/test_version_agreement.py . [100%] =============================== warnings summary =============================== examples/workchains/example_multistage_Al.py::example_multistage_al examples/workchains/example_multistage_Al.py::example_multistage_al /usr/lib/python3.6/importlib/_bootstrap.py:219: RuntimeWarning: numpy.ufunc size changed, may indicate binary incompatibility. Expected 192 from C header, got 216 from PyObject return f(*args, **kwds) /usr/local/lib/python3.6/dist-packages/_pytest/cacheprovider.py:127 /usr/local/lib/python3.6/dist-packages/_pytest/cacheprovider.py:127: PytestCacheWarning: could not create cache path /opt/aiida-cp2k/.pytest_cache/v/cache/stepwise self.warn("could not create cache path {path}", path=path) /usr/local/lib/python3.6/dist-packages/_pytest/cacheprovider.py:127 /usr/local/lib/python3.6/dist-packages/_pytest/cacheprovider.py:127: PytestCacheWarning: could not create cache path /opt/aiida-cp2k/.pytest_cache/v/cache/nodeids self.warn("could not create cache path {path}", path=path) -- Docs: https://docs.pytest.org/en/latest/warnings.html =================== 28 passed, 4 warnings in 1145.37 seconds =================== Summary: aiida-cp2k commit 7220545 works fine. Status: OK EndDate: 2020-02-19 19:48:08+00:00