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        <div class="dc:title">Proctor2017- Role of microRNAs in
osteoarthritis (Positive Feedforward Incoherent By MicroRNA)</div>
        <div class="dc:bibliographicCitation">
          <p>This model is described in the article:</p>
          <div class="bibo:title">
            <a href="http://identifiers.org/pubmed/29095952" title="Access to this publication">Computer simulation models
    as a tool to investigate the role of microRNAs in
    osteoarthritis.</a>
          </div>
          <div class="bibo:authorList">Proctor CJ, Smith GR.</div>
          <div class="bibo:Journal">PLoS ONE 2017; 12(11): e0187568</div>
          <p>Abstract:</p>
          <div class="bibo:abstract">
            <p>The aim of this study was to show how computational models
    can be used to increase our understanding of the role of
    microRNAs in osteoarthritis (OA) using miR-140 as an example.
    Bioinformatics analysis and experimental results from the
    literature were used to create and calibrate models of gene
    regulatory networks in OA involving miR-140 along with key
    regulators such as NF-?B, SMAD3, and RUNX2. The individual
    models were created with the modelling standard, Systems
    Biology Markup Language, and integrated to examine the overall
    effect of miR-140 on cartilage homeostasis. Down-regulation of
    miR-140 may have either detrimental or protective effects for
    cartilage, indicating that the role of miR-140 is complex.
    Studies of individual networks in isolation may therefore lead
    to different conclusions. This indicated the need to combine
    the five chosen individual networks involving miR-140 into an
    integrated model. This model suggests that the overall effect
    of miR-140 is to change the response to an IL-1 stimulus from a
    prolonged increase in matrix degrading enzymes to a pulse-like
    response so that cartilage degradation is temporary. Our
    current model can easily be modified and extended as more
    experimental data become available about the role of miR-140 in
    OA. In addition, networks of other microRNAs that are important
    in OA could be incorporated. A fully integrated model could not
    only aid our understanding of the mechanisms of microRNAs in
    ageing cartilage but could also provide a useful tool to
    investigate the effect of potential interventions to prevent
    cartilage loss.</p>
          </div>
        </div>
        <div class="dc:publisher">
          <p>This model is hosted on 
  <a href="http://www.ebi.ac.uk/biomodels/">BioModels Database</a>
  and identified by: 
  <a href="http://identifiers.org/biomodels.db/MODEL1610100004">MODEL1610100004</a>.</p>
          <p>To cite BioModels Database, please use: 
  <a href="http://identifiers.org/pubmed/25414348" target="_blank">Chelliah V et al. BioModels: ten-year
  anniversary. Nucl. Acids Res. 2015, 43(Database
  issue):D542-8</a>.</p>
        </div>
        <div class="dc:license">
          <p>To the extent possible under law, all copyright and related or
  neighbouring rights to this encoded model have been dedicated to
  the public domain worldwide. Please refer to 
  <a href="http://creativecommons.org/publicdomain/zero/1.0/" title="Access to: CC0 1.0 Universal (CC0 1.0), Public Domain Dedication">CC0
  Public Domain Dedication</a> for more information.</p>
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          <speciesReference metaid="_7e95997e-2cb3-4a92-a0fe-9095e231a1d5" species="Sink" stoichiometry="1"/>
        </listOfProducts>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">          
            <apply>
              <times/>
              <ci> cell </ci>
              <apply>
                <ci> Function_for_miR_degradation </ci>
                <ci> cell </ci>
                <ci> kdegMiR </ci>
                <ci> miR </ci>
              </apply>
            </apply>
          </math>
                </kineticLaw>
      </reaction>
      <reaction id="TF1target_transcription" metaid="_6986f74a-33d9-4096-8554-a4175b86b4c0" name="TF1target_transcription" reversible="false">
        <listOfReactants>
          <speciesReference metaid="e5f51345-e18f-425d-a075-6f499258f181" species="TF1" stoichiometry="1"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference metaid="d6b41dcf-a593-45a7-8b93-2c3ed1112277" species="TF1" stoichiometry="1"/>
          <speciesReference metaid="df233203-396d-4e01-b063-d0fab7d7c5f1" species="TF1target_mRNA" stoichiometry="1"/>
        </listOfProducts>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">          
            <apply>
              <times/>
              <ci> cell </ci>
              <apply>
                <ci> Function_for_TF1target_transcription </ci>
                <ci> TF1 </ci>
                <ci> cell </ci>
                <ci> ksynTF1targetmRNA </ci>
              </apply>
            </apply>
          </math>
                </kineticLaw>
      </reaction>
      <reaction id="TF1target_mRNA_degradation" metaid="_73c058a1-58db-424c-a842-65d620e963bb" name="TF1target_mRNA_degradation" reversible="false">
        <listOfReactants>
          <speciesReference metaid="b1bd6097-25a1-4f5f-b286-c75bb4fc6f96" species="TF1target_mRNA" stoichiometry="1"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference metaid="_65f8029f-21dc-43c7-b708-ff0bf8cb1373" species="Sink" stoichiometry="1"/>
        </listOfProducts>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">          
            <apply>
              <times/>
              <ci> cell </ci>
              <apply>
                <ci> Function_for_TF1target_mRNA_degradation </ci>
                <ci> TF1target_mRNA </ci>
                <ci> cell </ci>
                <ci> kdegTF1targetmRNA </ci>
              </apply>
            </apply>
          </math>
                </kineticLaw>
      </reaction>
      <reaction id="TF1target_mRNA_degradation_via_MiR" metaid="_5c3b5598-1fde-4d85-8f8a-1b746a3be6f4" name="TF1target_mRNA_degradation_via_MiR" reversible="false">
        <listOfReactants>
          <speciesReference metaid="_1193f29b-ff7c-4b4f-af1a-349332bbbbba" species="TF1target_mRNA" stoichiometry="1"/>
          <speciesReference metaid="ac6ba3f9-3477-4f9e-bcfa-a5ca0ba98b41" species="miR" stoichiometry="1"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference metaid="aae909f9-74d2-43a7-970b-fc5205cc692d" species="Sink" stoichiometry="1"/>
          <speciesReference metaid="_69f338fc-bea8-468b-af8c-3dad6947e60e" species="miR" stoichiometry="1"/>
        </listOfProducts>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">          
            <apply>
              <times/>
              <ci> cell </ci>
              <apply>
                <ci> Function_for_TF1target_mRNA_degradation_via_MiR </ci>
                <ci> TF1target_mRNA </ci>
                <ci> cell </ci>
                <ci> kdegTF1targetmRNAbyMiR </ci>
                <ci> miR </ci>
              </apply>
            </apply>
          </math>
                </kineticLaw>
      </reaction>
    </listOfReactions>
    <listOfEvents>
      <event id="ActivateSignal" metaid="_6a2af89d-8dca-43c1-961f-4e9442b7b30c" name="ActivateSignal" useValuesFromTriggerTime="true">
        <trigger>
          <math xmlns="http://www.w3.org/1998/Math/MathML">          
            <apply>
              <gt/>
              <csymbol encoding="text" definitionURL="http://www.sbml.org/sbml/symbols/time"> time </csymbol>
              <cn> 3600 </cn>
            </apply>
          </math>
                </trigger>
        <delay>
          <math xmlns="http://www.w3.org/1998/Math/MathML">          
            <cn> 0 </cn>
          </math>
                </delay>
        <listOfEventAssignments>
          <eventAssignment metaid="de33126a-e769-47f4-80ac-7cb656e5a883" variable="TF1">
            <math xmlns="http://www.w3.org/1998/Math/MathML">            
              <apply>
                <divide/>
                <cn> 500 </cn>
                <ci> cell </ci>
              </apply>
            </math>
                    </eventAssignment>
        </listOfEventAssignments>
      </event>
    </listOfEvents>
  </model>
</sbml>