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        <div class="dc:title">Proctor2017- Role of microRNAs in
osteoarthritis (Negative Feedback By MicroRNA)</div>
        <div class="dc:bibliographicCitation">
          <p>This model is described in the article:</p>
          <div class="bibo:title">
            <a href="http://identifiers.org/pubmed/29095952" title="Access to this publication">Computer simulation models
    as a tool to investigate the role of microRNAs in
    osteoarthritis.</a>
          </div>
          <div class="bibo:authorList">Proctor CJ, Smith GR.</div>
          <div class="bibo:Journal">PLoS ONE 2017; 12(11): e0187568</div>
          <p>Abstract:</p>
          <div class="bibo:abstract">
            <p>The aim of this study was to show how computational models
    can be used to increase our understanding of the role of
    microRNAs in osteoarthritis (OA) using miR-140 as an example.
    Bioinformatics analysis and experimental results from the
    literature were used to create and calibrate models of gene
    regulatory networks in OA involving miR-140 along with key
    regulators such as NF-?B, SMAD3, and RUNX2. The individual
    models were created with the modelling standard, Systems
    Biology Markup Language, and integrated to examine the overall
    effect of miR-140 on cartilage homeostasis. Down-regulation of
    miR-140 may have either detrimental or protective effects for
    cartilage, indicating that the role of miR-140 is complex.
    Studies of individual networks in isolation may therefore lead
    to different conclusions. This indicated the need to combine
    the five chosen individual networks involving miR-140 into an
    integrated model. This model suggests that the overall effect
    of miR-140 is to change the response to an IL-1 stimulus from a
    prolonged increase in matrix degrading enzymes to a pulse-like
    response so that cartilage degradation is temporary. Our
    current model can easily be modified and extended as more
    experimental data become available about the role of miR-140 in
    OA. In addition, networks of other microRNAs that are important
    in OA could be incorporated. A fully integrated model could not
    only aid our understanding of the mechanisms of microRNAs in
    ageing cartilage but could also provide a useful tool to
    investigate the effect of potential interventions to prevent
    cartilage loss.</p>
          </div>
        </div>
        <div class="dc:publisher">
          <p>This model is hosted on 
  <a href="http://www.ebi.ac.uk/biomodels/">BioModels Database</a>
  and identified by: 
  <a href="http://identifiers.org/biomodels.db/MODEL1610100001">MODEL1610100001</a>.</p>
          <p>To cite BioModels Database, please use: 
  <a href="http://identifiers.org/pubmed/25414348" target="_blank">Chelliah V et al. BioModels: ten-year
  anniversary. Nucl. Acids Res. 2015, 43(Database
  issue):D542-8</a>.</p>
        </div>
        <div class="dc:license">
          <p>To the extent possible under law, all copyright and related or
  neighbouring rights to this encoded model have been dedicated to
  the public domain worldwide. Please refer to 
  <a href="http://creativecommons.org/publicdomain/zero/1.0/" title="Access to: CC0 1.0 Universal (CC0 1.0), Public Domain Dedication">CC0
  Public Domain Dedication</a> for more information.</p>
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          <speciesReference metaid="_947bd122-073f-412d-9c7a-55a941d8d1f5" species="Sink" stoichiometry="1"/>
        </listOfProducts>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">          
            <apply>
              <times/>
              <ci> cell </ci>
              <apply>
                <ci> Function_for_miR_degradation </ci>
                <ci> cell </ci>
                <ci> kdegMiR </ci>
                <ci> miR </ci>
              </apply>
            </apply>
          </math>
                </kineticLaw>
      </reaction>
      <reaction id="TF1_transcription" metaid="f5db8bb4-9f9f-4edb-a91d-51c332a51007" name="TF1_transcription" reversible="false">
        <listOfReactants>
          <speciesReference metaid="ff95a926-0e46-4745-b913-879aa408bb55" species="Signal" stoichiometry="1"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference metaid="_443ffa9b-b27f-43d6-86e1-a711ce513368" species="Signal" stoichiometry="1"/>
          <speciesReference metaid="_786f0372-276e-4648-9d47-2d78eba9712a" species="TF1_mRNA" stoichiometry="1"/>
        </listOfProducts>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">          
            <apply>
              <times/>
              <ci> cell </ci>
              <apply>
                <ci> Function_for_TF1_transcription </ci>
                <ci> Signal </ci>
                <ci> cell </ci>
                <ci> ksynTF1mRNA </ci>
              </apply>
            </apply>
          </math>
                </kineticLaw>
      </reaction>
      <reaction id="TF1_mRNA_degradation" metaid="f318e733-39dc-45f5-85ba-97892c8970e1" name="TF1_mRNA_degradation" reversible="false">
        <listOfReactants>
          <speciesReference metaid="_5925500e-c007-4b08-a45f-49b28dd61a3b" species="TF1_mRNA" stoichiometry="1"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference metaid="d41d254a-68ec-4999-aa66-e8e1f619810c" species="Sink" stoichiometry="1"/>
        </listOfProducts>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">          
            <apply>
              <times/>
              <ci> cell </ci>
              <apply>
                <ci> Function_for_TF1_mRNA_degradation </ci>
                <ci> TF1_mRNA </ci>
                <ci> cell </ci>
                <ci> kdegTF1mRNA </ci>
              </apply>
            </apply>
          </math>
                </kineticLaw>
      </reaction>
      <reaction id="TF1_mRNA_degradation_via_miR" metaid="_3269844d-b2d0-4aff-a44a-17cb654ceac1" name="TF1_mRNA_degradation_via_miR" reversible="false">
        <listOfReactants>
          <speciesReference metaid="_39856c0e-920c-46d4-95d0-87cd5cc223fc" species="TF1_mRNA" stoichiometry="1"/>
          <speciesReference metaid="c7cde9d4-56ea-45fa-bbfa-aff2657877b9" species="miR" stoichiometry="1"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference metaid="_23d7612a-f5b8-4380-bb92-ee027d94ce41" species="miR" stoichiometry="1"/>
        </listOfProducts>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">          
            <apply>
              <times/>
              <ci> cell </ci>
              <apply>
                <ci> Function_for_TF1_mRNA_degradation_via_miR </ci>
                <ci> TF1_mRNA </ci>
                <ci> cell </ci>
                <ci> kdegTF1mRNAbyMiR </ci>
                <ci> miR </ci>
              </apply>
            </apply>
          </math>
                </kineticLaw>
      </reaction>
      <reaction id="TF1_translation" metaid="_2eb1ab2d-0ad9-4d8f-b80b-6f4f56eb331d" name="TF1_translation" reversible="false">
        <listOfReactants>
          <speciesReference metaid="_462c18c4-6ff6-42c3-b179-492727986d47" species="TF1_mRNA" stoichiometry="1"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference metaid="_2eb1b03e-ee6f-4998-bb1a-dcee4fc4d9ec" species="TF1_mRNA" stoichiometry="1"/>
          <speciesReference metaid="_7fcf3d48-4fdf-442e-8b95-2250b4beca91" species="TF1" stoichiometry="1"/>
        </listOfProducts>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">          
            <apply>
              <times/>
              <ci> cell </ci>
              <apply>
                <ci> Function_for_TF1_translation </ci>
                <ci> TF1_mRNA </ci>
                <ci> cell </ci>
                <ci> ksynTF1 </ci>
              </apply>
            </apply>
          </math>
                </kineticLaw>
      </reaction>
      <reaction id="TF1_degradation" metaid="_8126ab67-127c-481e-aaab-6d5432d2d688" name="TF1_degradation" reversible="false">
        <listOfReactants>
          <speciesReference metaid="_698adcc2-3894-4251-a301-5fde7b4c0fc1" species="TF1" stoichiometry="1"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference metaid="_57720007-7b3b-415c-9b52-d1a8b15efee9" species="Sink" stoichiometry="1"/>
        </listOfProducts>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">          
            <apply>
              <times/>
              <ci> cell </ci>
              <apply>
                <ci> Function_for_TF1_degradation </ci>
                <ci> TF1 </ci>
                <ci> cell </ci>
                <ci> kdegTF1 </ci>
              </apply>
            </apply>
          </math>
                </kineticLaw>
      </reaction>
    </listOfReactions>
    <listOfEvents>
      <event id="ActivateSignal" metaid="c2ee5dec-a54c-407d-b913-26e8fe6bf30d" name="ActivateSignal">
        <trigger>
          <math xmlns="http://www.w3.org/1998/Math/MathML">          
            <apply>
              <gt/>
              <csymbol encoding="text" definitionURL="http://www.sbml.org/sbml/symbols/time"> time </csymbol>
              <cn> 3600 </cn>
            </apply>
          </math>
                </trigger>
        <delay>
          <math xmlns="http://www.w3.org/1998/Math/MathML">          
            <cn> 0 </cn>
          </math>
                </delay>
        <listOfEventAssignments>
          <eventAssignment metaid="e6cd6fb3-b001-4f87-8c0e-65ddc2b34be7" variable="Signal">
            <math xmlns="http://www.w3.org/1998/Math/MathML">            
              <apply>
                <divide/>
                <cn> 1 </cn>
                <ci> cell </ci>
              </apply>
            </math>
                    </eventAssignment>
        </listOfEventAssignments>
      </event>
    </listOfEvents>
  </model>
</sbml>