A B C D E F G H I L M N O P R S T U W X Y Z

A

abs(double[]) - Static method in class tpp.MatrixUtils
 
accept(File) - Method in class tpp.ARFFFileFilter
 
accept(File) - Method in class tpp.CSVFileFilter
 
acceptsInstances() - Method in class tpp.TPPPerspective
Returns true if this perspective accepts instances
actionPerformed(ActionEvent) - Method in class tpp.ExcelAdapter
This method is activated on the Keystrokes we are listening to in this implementation.
actionPerformed(ActionEvent) - Method in class tpp.ScatterPlotControlPanel
 
actionPerformed(ActionEvent) - Method in class tpp.SelectButton
 
actionPerformed(ActionEvent) - Method in class tpp.TPPFrame
 
actionPerformed(ActionEvent) - Method in class tpp.TPPPanel
 
add(Connection) - Method in class tpp.Graph
 
add(Object) - Method in class tpp.HierarchicalCluster
cluster can only contain Instances or other Clusters
add(double[], double[]) - Static method in class tpp.MatrixUtils
add a1 to a2.
addJitter(boolean) - Method in class tpp.ScatterPlotViewPanel
Whether to add noise to the current view
addListener(TPPModelEventListener) - Method in class tpp.TPPModel
 
addSelectionInterval(int, int) - Method in class tpp.ProjectionTableListSelectionModel
 
agglomerativeClustering(TPPModel, HierarchicalAgglomerativeClustering.ClusterDistanceCalculator) - Method in class tpp.HierarchicalAgglomerativeClustering
HAC using the given distance measure
ALL_ATTRIBUTES - Static variable in class tpp.AttributeCombo
 
areAxesSelected() - Method in class tpp.ScatterPlotModel
Are any axes selected?
arePointsSelected() - Method in class tpp.TPPModel
Are any points selected?
ARFFFileFilter - Class in tpp
A file filter that only shows files with an .arff extension
ARFFFileFilter() - Constructor for class tpp.ARFFFileFilter
 
ARFFImporter - Class in tpp
 
ARFFImporter() - Constructor for class tpp.ARFFImporter
 
array2String(double[][]) - Static method in class tpp.MatrixUtils
 
ASCENDING - Static variable in class tpp.TableSorter
 
AttributeCombo - Class in tpp
A combo box that allows the user to select an attribute -- either a numeric attribute, or a nominal attribute, or any attribute
AXIS_SELECTION_CHANGED - Static variable in class tpp.TPPModelEvent
The selection of axes have changed

B

bipolarColorColumn(int) - Method in class tpp.ProjectionTableModel
Should this column be colored along a bipolar spectrum?
buildArrowHead(Line2D, double, boolean) - Static method in class tpp.MarkerFactory
Build an arrow head for the given line
buildClassifier(Instances) - Method in class weka.classifiers.meta.UnbiasedAttributeSelectedClassifier
Build the classifier on the dimensionally reduced data.
buildCombo(TPPModel, int, boolean) - Static method in class tpp.AttributeCombo
build a combo box containing attributes from the model
buildEvaluator(Instances) - Method in class weka.attributeSelection.TPPAttributeEvaluation
 
buildMarker(int, double, double, double) - Static method in class tpp.MarkerFactory
Build a marker Shape object
buildSelectButtons(ScatterPlotModel) - Static method in class tpp.SelectButton
Build a set of buttons for selecting by values of an attribute.

C

canUndo() - Method in class tpp.ScatterPlotModel
Whether there is a snapshot to undo to.
centerX() - Method in class tpp.Rectangle
The x coordinate of the center of the rectangle
centerY() - Method in class tpp.Rectangle
The y coordinate of the center of the rectangle
CLASS_UNKNOWN - Static variable in class tpp.TPPModel
The value of the class attribute that indicates that the class of this instance is unknown.
clearSelection() - Method in class tpp.ProjectionTableListSelectionModel
 
clone() - Method in class tpp.ScatterPlotModel
 
clone() - Method in class tpp.TPPModel
 
cluster(int) - Method in class tpp.TPPModel
Create a new attribute that clusters the original data.
COLOR_SCHEME_CHANGED - Static variable in class tpp.TPPModelEvent
The color scheme has changed
ColourScheme - Class in tpp
A ColourScheme is made up of a palette of colors for drawing a TPP graph.
columnarTimes(Matrix, double[]) - Static method in class tpp.MatrixUtils
Create a new matrix, the result of multiplying each column of the given matrix by the corresponding scalar value in the array.
columnMeans(Matrix) - Static method in class tpp.MatrixUtils
The means of each column
columnMeans(double[][]) - Static method in class tpp.MatrixUtils
The means of each column
columnStdev(Matrix) - Static method in class tpp.MatrixUtils
The stdev of each column
columnStdev(double[][]) - Static method in class tpp.MatrixUtils
The stdev of each column
COMPARABLE_COMAPRATOR - Static variable in class tpp.TableSorter
 
componentHidden(ComponentEvent) - Method in class tpp.ScatterPlotViewPanel
 
componentHidden(ComponentEvent) - Method in class tpp.TPPPanel
 
componentMoved(ComponentEvent) - Method in class tpp.ScatterPlotViewPanel
 
componentMoved(ComponentEvent) - Method in class tpp.TPPPanel
 
componentResized(ComponentEvent) - Method in class tpp.ScatterPlotViewPanel
 
componentResized(ComponentEvent) - Method in class tpp.TPPPanel
 
componentShown(ComponentEvent) - Method in class tpp.ScatterPlotViewPanel
 
componentShown(ComponentEvent) - Method in class tpp.TPPPanel
 
Connection - Class in tpp
 
Connection(String, String) - Constructor for class tpp.Connection
 
contains(double, double) - Method in class tpp.Rectangle
Is (x,y) inside the rectangle?
createCrossValidation(Attribute, Classifier) - Method in class tpp.TPPModel
Perform 10-fold cross validation for the given attribute.
createHierarchicalClustering() - Method in class tpp.TPPModel
 
createSeries(Attribute, Attribute) - Method in class tpp.ScatterPlotModel
 
createSeries(Attribute, Attribute) - Method in class tpp.TPPModel
Create a series in the instances using the given index and id attributes (specified by name).
createTestSet(int) - Method in class tpp.ScatterPlotModel
 
createTestSet(int) - Method in class tpp.TPPModel
Create a test set comprising 1/k'th of the instances.
CSVDataImporter - Class in tpp
A class for importing TPPModels from a CSV or TSV file
CSVDataImporter() - Constructor for class tpp.CSVDataImporter
 
CSVFileFilter - Class in tpp
A file filter that only shows files with an .csv .tsv or .dat extension
CSVFileFilter() - Constructor for class tpp.CSVFileFilter
 

D

DARK - Static variable in class tpp.ColourScheme
 
DATA_SET_CHANGED - Static variable in class tpp.TPPModelEvent
The data set has been changed
DATA_STRUCTURE_CHANGED - Static variable in class tpp.TPPModelEvent
The structure of the data set has changed (attributes or points have been added or removed)
DATA_VALUE_CHANGED - Static variable in class tpp.TPPModelEvent
The values of the data set have been changed
DataImporter - Interface in tpp
A class capable of importing a set of instances from a source.
DataViewer - Class in tpp
 
DataViewer(ScatterPlotModel) - Constructor for class tpp.DataViewer
 
DataViewerTable - Class in tpp
 
DataViewerTable(ScatterPlotModel) - Constructor for class tpp.DataViewerTable
 
DECORATION_CHANGED - Static variable in class tpp.TPPModelEvent
Other information used to decorate the visualisation (such as series lines or target markers) has changed
DEFAULT_DELIMITER - Static variable in class tpp.TSVFileReader
 
DESCENDING - Static variable in class tpp.TableSorter
 
dissimilarity(double[][], double[][]) - Static method in class tpp.MatrixUtils
The size of the difference between two arrays
distances(double[][]) - Static method in class tpp.MatrixUtils
 
distributionForInstance(Instance) - Method in class weka.classifiers.meta.UnbiasedAttributeSelectedClassifier
Classifies a given instance after attribute selection
draw(Graphics2D) - Method in class tpp.Rectangle
 
drawRectangleAroundSelectedAxes() - Method in class tpp.ScatterPlotModel
Create a rectangle that includes all selected axes
drawRectangleAroundSelectedPoints() - Method in class tpp.ScatterPlotModel
Create a rectangle that includes all selected points

E

enumerateMeasures() - Method in class weka.classifiers.meta.UnbiasedAttributeSelectedClassifier
Returns an enumeration of the additional measure names
evaluatorTipText() - Method in class weka.classifiers.meta.UnbiasedAttributeSelectedClassifier
Returns the tip text for this property
ExcelAdapter - Class in tpp
ExcelAdapter enables Copy-Paste Clipboard functionality on JTables.
ExcelAdapter(JTable) - Constructor for class tpp.ExcelAdapter
The Excel Adapter is constructed with a JTable on which it enables Copy-Paste and acts as a Clipboard listener.
expandToInclude(double, double) - Method in class tpp.Rectangle
Expand rectangle as required to include a point.
Exporter - Class in tpp
Utility class for exporting aspects of a TPP Model in various formats.
Exporter() - Constructor for class tpp.Exporter
 

F

filter(double[]) - Method in interface tpp.Filter1D
 
filter(double[]) - Method in class tpp.Gaussian
 
Filter1D - Interface in tpp
A filter for smoothing a 1D array of numbers.
findNearestAxes(Point2D.Double) - Method in class tpp.ScatterPlotViewPanel
Find the indices of the nearest axes to the given coordinates in data space.
findNearestPoints(Point2D.Double) - Method in class tpp.ScatterPlotViewPanel
Find the indices of the nearest points to the given coordinates in data space.
findNearestValid(Projection) - Method in interface tpp.ProjectionConstraint
Find the nearest projection to that given that meets the constraint
findNearestValid(Projection) - Method in class tpp.ZeroConstraint
 
fireTableDataChanged() - Method in class tpp.ProjectionTable
 

G

Gaussian - Class in tpp
filter an array using a 1D Gaussian filter, sd=1.0
Gaussian() - Constructor for class tpp.Gaussian
 
get(int) - Method in class tpp.HierarchicalCluster
 
getAllConnections() - Method in class tpp.Graph
 
getAllSeries() - Method in class tpp.Series
The series themselves.
getAttributeByName(String) - Method in class tpp.TPPModel
 
getAttributes() - Method in class tpp.TPPModel
 
getAxesColor() - Method in class tpp.ColourScheme
 
getAxisForAttribute(Attribute) - Method in class tpp.ScatterPlotModel
Determine which axis represents the given attribute.
getBackgroundColor() - Method in class tpp.ColourScheme
 
getCalculatedNumToSelect() - Method in class weka.attributeSelection.TPPAttributeSearch
 
getCapabilities() - Method in class weka.attributeSelection.TPPAttributeSearch
Returns the capabilities of this evaluator.
getCapabilities() - Method in class weka.classifiers.meta.UnbiasedAttributeSelectedClassifier
Returns default capabilities of the classifier.
getCentroid() - Method in class tpp.HierarchicalCluster
 
getCentroids(Attribute) - Method in class tpp.TPPModel
Get the centroids of the data points for the classes defined by the given attribute
getClassificationColor(int) - Method in class tpp.ColourScheme
 
getClassificationColors() - Method in class tpp.ColourScheme
 
getClassificationPanel() - Method in class tpp.ScatterPlotControlPanel
 
getColorFromSpectrum(double, double, double) - Method in class tpp.ColourScheme
Get a color for representing a value of c within a range of [lower,upper].
getColourAttribute() - Method in class tpp.ScatterPlotModel
 
getColours() - Method in class tpp.ScatterPlotModel
Get teh color scheme
getColumn(Matrix, int) - Static method in class tpp.MatrixUtils
 
getColumn(double[][], int) - Static method in class tpp.MatrixUtils
 
getColumnClass(int) - Method in class tpp.ProjectionTableModel
 
getColumnClass(int) - Method in class tpp.TableSorter
 
getColumnCount() - Method in class tpp.ProjectionTableModel
 
getColumnCount() - Method in class tpp.TableSorter
 
getColumnName(int) - Method in class tpp.ProjectionTableModel
 
getColumnName(int) - Method in class tpp.TableSorter
 
getConvergenceLimit() - Method in class weka.attributeSelection.TPPAttributeSearch
 
getData() - Method in class tpp.TPPModel
The normalised numeric data
getDateAttributes() - Method in class tpp.TPPModel
 
getDescription() - Method in class tpp.ARFFFileFilter
 
getDescription() - Method in class tpp.CSVFileFilter
 
getDescriptionOfAttributes(int[]) - Method in class tpp.TPPModel
 
getDescriptionOfInstance(int[]) - Method in class tpp.TPPModel
 
getEpochLimit() - Method in class weka.attributeSelection.TPPAttributeSearch
 
getEvaluator() - Method in class weka.classifiers.meta.UnbiasedAttributeSelectedClassifier
Gets the attribute evaluator used
getExplorer() - Method in class tpp.TPPExplorerPanel
 
getFillAttribute() - Method in class tpp.ScatterPlotModel
 
getForegroundColor() - Method in class tpp.ColourScheme
 
getGenerateRanking() - Method in class weka.attributeSelection.TPPAttributeSearch
This class will always rank attributes, so this method always returns true
getGraph() - Method in class tpp.Graph
 
getGraph() - Method in class tpp.TPPModel
 
getHierarchicalCluster() - Method in class tpp.TPPModel
 
getIdAttribute() - Method in class tpp.Series
 
getIndexAttribute() - Method in class tpp.Series
 
getInstances() - Method in class tpp.HierarchicalCluster
All the instances in all the sub-clusters of this one
getInstances() - Method in class tpp.TPPModel
Get the underlying instances
getJTable() - Method in class tpp.ExcelAdapter
Public Accessor methods for the Table on which this adapter acts.
getMarkerSize() - Method in class tpp.ScatterPlotModel
 
getMax() - Method in class tpp.SelectButton
 
getMaxSelectionIndex() - Method in class tpp.ProjectionTableListSelectionModel
 
getMeasure(String) - Method in class weka.classifiers.meta.UnbiasedAttributeSelectedClassifier
Returns the value of the named measure
getMembers() - Method in class tpp.HierarchicalCluster
 
getMin() - Method in class tpp.SelectButton
 
getMinSelectionIndex() - Method in class tpp.ProjectionTableListSelectionModel
 
getModel() - Method in class tpp.TPPFrame
 
getModel() - Method in class tpp.TPPPanel
 
getNodeInstance(Instances, String) - Method in class tpp.Connection
 
getNominalAttributes() - Method in class tpp.TPPModel
 
getNormalisedDistances() - Method in class tpp.TPPModel
 
getNumDataDimensions() - Method in class tpp.TPPModel
The number of dimensions in the numeric data
getNumDataPoints() - Method in class tpp.TPPModel
The number of points
getNumericAttributes() - Method in class tpp.TPPModel
 
getNumOutputDimensions() - Method in class weka.attributeSelection.TPPAttributeSearch
The number of output dimensions (default=2)
getNumToPreSelect() - Method in class weka.attributeSelection.TPPAttributeSearch
The number of attributes to pre-select using IG
getNumToSelect() - Method in class weka.attributeSelection.TPPAttributeSearch
 
getNumViewDimensions() - Method in class tpp.TPPModel
Get the number of output dimensions
getOptions() - Method in class weka.attributeSelection.TPPAttributeSearch
Gets the current settings of attributes.
getOptions() - Method in class weka.classifiers.meta.UnbiasedAttributeSelectedClassifier
Gets the current settings of the Classifier.
getPerspectiveIcon() - Method in class tpp.TPPPerspective
Get the icon for this perspective.
getPerspectiveTipText() - Method in class tpp.TPPPerspective
Get the tool tip text for this perspective.
getPerspectiveTitle() - Method in class tpp.TPPPerspective
Get the title of this perspective
getPointDescriptions() - Method in class tpp.TPPModel
Create an array of descriptions of each point, based on any string attributes
getPointsInTrainingSet() - Method in class tpp.TPPModel
Return a boolean array indicating whether each instance is a member of the training (true) or test (false) set.
getProjection() - Method in class tpp.TPPModel
The current projection
getProjectionConstraint() - Method in class tpp.TPPModel
Return the constraint that any projection must meet.
getProjectionTable() - Method in class tpp.ScatterPlotControlPanel
 
getRevision() - Method in class weka.classifiers.meta.UnbiasedAttributeSelectedClassifier
Returns the revision string.
getRow(Matrix, int) - Static method in class tpp.MatrixUtils
 
getRowCount() - Method in class tpp.ProjectionTableModel
 
getRowCount() - Method in class tpp.TableSorter
 
getSearch() - Method in class weka.classifiers.meta.UnbiasedAttributeSelectedClassifier
Gets the search method used
getSelectAttribute() - Method in class tpp.ScatterPlotModel
 
getSelectedAttribute() - Method in class tpp.AttributeCombo
 
getSelectedAttributeIndices() - Method in class tpp.ProjectionTable
Get the indices of the selected attributes.
getSelectedAttributes() - Method in class tpp.ProjectionTable
Get the selected attributes.
getSeparationAttribute() - Method in class tpp.TPPModel
 
getSeries() - Method in class tpp.TPPModel
Get the series defined within the data
getShapeAttribute() - Method in class tpp.ScatterPlotModel
 
getShowView() - Method in class weka.attributeSelection.TPPAttributeSearch
Whether to show the projected data as it is separated
getSizeAttribute() - Method in class tpp.ScatterPlotModel
 
getSortingStatus(int) - Method in class tpp.TableSorter
 
getSource() - Method in class tpp.TPPModelEvent
 
getSourceNode() - Method in class tpp.Connection
 
getSpectrum() - Method in class tpp.ColourScheme
 
getStringAttributes() - Method in class tpp.TPPModel
Get the string attributes.
getTableHeader() - Method in class tpp.TableSorter
 
getTableModel() - Method in class tpp.TableSorter
 
getTabTitle() - Method in class tpp.TPPExplorerPanel
 
getTabTitleToolTip() - Method in class tpp.TPPExplorerPanel
 
getTarget() - Method in class tpp.TPPModel
 
getTargetNode() - Method in class tpp.Connection
 
getTechnicalInformation() - Method in class tpp.TPPPanel
 
getTechnicalInformation() - Method in class weka.attributeSelection.TPPAttributeEvaluation
Returns an instance of a TechnicalInformation object, containing detailed information about the technical background of this class, e.g., paper reference or book this class is based on.
getTechnicalInformation() - Method in class weka.attributeSelection.TPPAttributeSearch
Returns an instance of a TechnicalInformation object, containing detailed information about the technical background of this class, e.g., paper reference or book this class is based on.
getTestAttribute() - Method in class tpp.TPPModel
Return the attribute that defines the test/prediction set.
getThreshold() - Method in class weka.attributeSelection.TPPAttributeSearch
 
getTransform(double, double) - Method in class tpp.ScatterPlotModel
Return a transform that will map data space onto device space of the given width and height, so that the points (and axes, if shown) fit snugly into the panel, adjusting the projection so that the scale of the transform is within reasonable limits.
getTransform() - Method in class tpp.ScatterPlotModel
 
getType() - Method in class tpp.TPPModelEvent
 
getValue() - Method in class tpp.SelectButton
 
getValueAt(int, int) - Method in class tpp.ProjectionTableModel
 
getValueAt(int, int) - Method in class tpp.TableSorter
 
getView() - Method in class tpp.TPPModel
The view of the data
getViewAsString() - Method in class tpp.TPPModel
 
getX1() - Method in class tpp.Rectangle
 
getX2() - Method in class tpp.Rectangle
 
getY1() - Method in class tpp.Rectangle
 
getY2() - Method in class tpp.Rectangle
 
globalInfo() - Method in class weka.attributeSelection.TPPAttributeEvaluation
 
globalInfo() - Method in class weka.attributeSelection.TPPAttributeSearch
 
globalInfo() - Method in class weka.classifiers.meta.UnbiasedAttributeSelectedClassifier
Returns a string describing this search method
Graph - Class in tpp
 
Graph() - Constructor for class tpp.Graph
 
graph() - Method in class weka.classifiers.meta.UnbiasedAttributeSelectedClassifier
Returns graph describing the classifier (if possible).
GraphImporter - Class in tpp
 
GraphImporter() - Constructor for class tpp.GraphImporter
 
graphType() - Method in class weka.classifiers.meta.UnbiasedAttributeSelectedClassifier
Returns the type of graph this classifier represents.

H

height() - Method in class tpp.Rectangle
 
HELP_URL - Static variable in class tpp.TargetedProjectionPursuit
 
HierarchicalAgglomerativeClustering - Class in tpp
Class for performing HAC using the S.
HierarchicalAgglomerativeClustering() - Constructor for class tpp.HierarchicalAgglomerativeClustering
 
HierarchicalCluster - Class in tpp
A cluster of instances and or other clusters

I

importData() - Method in class tpp.ARFFImporter
 
importData() - Method in class tpp.CSVDataImporter
 
importData() - Method in interface tpp.DataImporter
 
importGraph() - Method in class tpp.GraphImporter
 
indexOf(Attribute) - Method in class tpp.TPPModel
Get the index of the attribute within the instances (starting at 0; returns -1 if not found.
indexOf(Instance) - Method in class tpp.TPPModel
returns -1 if not found.
init() - Method in class tpp.ScatterPlotControlPanel
Initialise this panel, creating the controls necessary to manipulate this scatter plot
initialiseListener(ScatterPlotModel) - Method in class tpp.Rectangle
Create a listener that is capable of updating a model in response to changes to this rectangle.
initialiseSelectionButtons() - Method in class tpp.SelectionPanel
 
initRectangle(Point2D, Point2D) - Method in class tpp.ScatterPlotModel
Initialise a rectangle with corners at the given points
insertRow(Matrix, double[]) - Static method in class tpp.MatrixUtils
Insert a row of values into the bottom of the given matrix.
INTERVALS - Static variable in class tpp.ColourScheme
The number of colors in the spectrum.
isAxisSelected(int) - Method in class tpp.ScatterPlotModel
 
isCellEditable(int, int) - Method in class tpp.ProjectionTableModel
 
isCellEditable(int, int) - Method in class tpp.TableSorter
 
isLeaf() - Method in class tpp.HierarchicalCluster
is this a leaf? ie does it contain just one instance and no sub-clusters
isPointInTestingSet(int) - Method in class tpp.TPPModel
Is a specific point in the testing set or is the classification of it unknown.
isPointSelected(int) - Method in class tpp.TPPModel
 
isSelectedIndex(int) - Method in class tpp.ProjectionTableListSelectionModel
 
isSelectionEmpty() - Method in class tpp.ProjectionTableListSelectionModel
 
isSorting() - Method in class tpp.TableSorter
 
isValid(Projection) - Method in interface tpp.ProjectionConstraint
Whether or not the given projection meets the constraint
isValid(Projection) - Method in class tpp.ZeroConstraint
 

L

length(double[]) - Static method in class tpp.MatrixUtils
Euclidean length of a row vector
LEXICAL_COMPARATOR - Static variable in class tpp.TableSorter
 
LIGHT - Static variable in class tpp.ColourScheme
 
LinearProjection - Class in tpp
A linear projection.
LinearProjection(int, int) - Constructor for class tpp.LinearProjection
 
LinearProjection(Matrix) - Constructor for class tpp.LinearProjection
Construct a LinearProjection from a matrix
listOptions() - Method in class weka.attributeSelection.TPPAttributeSearch
Returns an enumeration describing the available options.
listOptions() - Method in class weka.classifiers.meta.UnbiasedAttributeSelectedClassifier
Returns an enumeration describing the available options.
loadGraph(Graph) - Method in class tpp.ScatterPlotModel
 
loadGraph(Graph) - Method in class tpp.TPPModel
 
localMean(double[], int) - Static method in class tpp.MatrixUtils
Find the local mean -- ie the mean of the n neighbours on either side.
localVolatility(double[], int) - Static method in class tpp.MatrixUtils
Find the local volatility -- ie the root sum square distance from the local mean.
logistic(double) - Static method in class tpp.MatrixUtils
The logistic function of a double L(x) = 1 / (1+exp(-x)
logistic(double[]) - Static method in class tpp.MatrixUtils
The logistic function of an array of doubles

M

main(String[]) - Static method in class tpp.Gaussian
 
main(String[]) - Static method in class tpp.MatrixUtils
 
main(String[]) - Static method in class tpp.TargetedProjectionPursuit
 
main(String[]) - Static method in class tpp.TPPPanel
Test method
main(String[]) - Static method in class weka.attributeSelection.TPPAttributeSearch
Test method
main(String[]) - Static method in class weka.classifiers.meta.UnbiasedAttributeSelectedClassifier
Main method for testing this class.
MarkerFactory - Class in tpp
 
MarkerFactory() - Constructor for class tpp.MarkerFactory
 
MatrixUtils - Class in tpp
Matrix Utilities !!TODO make all methods instance rather than static !!TODO change all these methods to just work on Matrix objects rather than double arrays -- and change the rest of the application to use double arrays less.
MatrixUtils() - Constructor for class tpp.MatrixUtils
 
maxAbsValue(Matrix) - Static method in class tpp.MatrixUtils
The maximum absolute value of components in the matrix.
maxAbsValueCol(Matrix) - Static method in class tpp.MatrixUtils
The maximum absolute value of components in each column of the matrix.
mean(double[]) - Static method in class tpp.MatrixUtils
Find the mean of an array of doubles.
measureNumAttributesSelected() - Method in class weka.classifiers.meta.UnbiasedAttributeSelectedClassifier
Additional measure --- number of attributes selected
measureSelectionTime() - Method in class weka.classifiers.meta.UnbiasedAttributeSelectedClassifier
Additional measure --- time taken (milliseconds) to select the attributes
measureTime() - Method in class weka.classifiers.meta.UnbiasedAttributeSelectedClassifier
Additional measure --- time taken (milliseconds) to select attributes and build the classifier
minMax(double[]) - Static method in class tpp.MatrixUtils
The min and max of a set of numbers
modelChanged(TPPModelEvent) - Method in class tpp.DataViewer
 
modelChanged(TPPModelEvent) - Method in class tpp.ScatterPlotControlPanel
 
modelChanged(TPPModelEvent) - Method in class tpp.ScatterPlotViewPanel
 
modelChanged(TPPModelEvent) - Method in class tpp.TPPExplorerPanel
 
modelChanged(TPPModelEvent) - Method in interface tpp.TPPModelEventListener
 
modelChanged(TPPModelEvent) - Method in class weka.attributeSelection.TPPAttributeSearch
 
modelIndex(int) - Method in class tpp.TableSorter
 
mouseClicked(MouseEvent) - Method in class tpp.SeparatePointsButton
 
mouseClicked(MouseEvent) - Method in class tpp.SmoothButton
 
mouseEntered(MouseEvent) - Method in class tpp.SeparatePointsButton
 
mouseEntered(MouseEvent) - Method in class tpp.SmoothButton
 
mouseExited(MouseEvent) - Method in class tpp.SeparatePointsButton
 
mouseExited(MouseEvent) - Method in class tpp.SmoothButton
 
mousePressed(MouseEvent) - Method in class tpp.SeparatePointsButton
 
mousePressed(MouseEvent) - Method in class tpp.SmoothButton
 
mouseReleased(MouseEvent) - Method in class tpp.SeparatePointsButton
 
mouseReleased(MouseEvent) - Method in class tpp.SmoothButton
 
moveSelectedAxes(double, double) - Method in class tpp.ScatterPlotModel
Move the selected axes by the (dx,dy)

N

NAME_COL - Static variable in class tpp.ProjectionTableModel
 
next(Instance) - Method in class tpp.Series
Find the instance after this one in whichever series it is a member of.
next(int) - Method in class tpp.Series
Find the index of the next instance, given the index of an instance.
NOMINAL_ATTRIBUTES - Static variable in class tpp.AttributeCombo
 
nominalToBinary(Attribute) - Method in class tpp.TPPModel
Convert a nominal attribute into N x binary numeric attributes
normalise() - Method in class tpp.LinearProjection
Scale the projection so that all values are in the range [-1,1].
normalise(double[]) - Static method in class tpp.MatrixUtils
Normalise by dividing by root mean square
normalizeDataUnit() - Method in class tpp.TPPModel
Normalize the numeric data from the filtered instances to the range [0,1] (ie the minimum data value will be reset to 0 and maximum to 1.
normalizeProjection() - Method in class tpp.TPPModel
 
NOT_SORTED - Static variable in class tpp.TableSorter
 
numeric2matrix(Instances) - Static method in class tpp.MatrixUtils
Construct a matrix from (the numeric attributes of ) a set of instances.
NUMERIC_ATTRIBUTES - Static variable in class tpp.AttributeCombo
 
numPointsSelected() - Method in class tpp.TPPModel
How many points are currently selected

O

onCorner(double, double, double) - Method in class tpp.Rectangle
Is the given point on a corner, given the error margin.

P

paintComponent(Graphics) - Method in class tpp.ScatterPlotViewPanel
 
paintView(Graphics2D, AffineTransform, int, int) - Method in class tpp.ScatterPlotViewPanel
Paint the scatter plot to the given Graphics, using the given mapping from data (aka user) space to device space, and with markers of the given size (in pixels) If transform is null then use the default one.
PCA(Matrix) - Method in class tpp.LinearProjection
Find the principle components of the given data.
PCA() - Method in class tpp.TPPModel
 
PerturbationPursuit - Interface in tpp
A concrete instance of this class is capable of perturbing the target and pursuing it - ie finding a projection that minimises the difference between the view of the data resulting from teh projection and the revised target and.
PerturbationPursuitThread - Class in tpp
A thread that will continuously apply a perturbation target, pursue it, and redisplay the results
PerturbationPursuitThread(PerturbationPursuit) - Constructor for class tpp.PerturbationPursuitThread
 
POINT_SELECTION_CHANGED - Static variable in class tpp.TPPModelEvent
The selection of points have changed
postProcess(int[]) - Method in class weka.attributeSelection.TPPAttributeEvaluation
 
prepareRenderer(TableCellRenderer, int, int) - Method in class tpp.DataViewerTable
 
prepareRenderer(TableCellRenderer, int, int) - Method in class tpp.ProjectionTable
 
previous(Instance) - Method in class tpp.Series
Find the instance before this one in whichever series it is a member of.
previous(int) - Method in class tpp.Series
Find the index of the previous instance, given the index of an instance.
project(Matrix) - Method in class tpp.LinearProjection
 
project(Matrix) - Method in interface tpp.Projection
Apply the projection to the given data.
project() - Method in class tpp.TPPModel
Project the data to produce a new view.
Projection - Interface in tpp
A projection from a data-space to a view-space.
PROJECTION_CHANGED - Static variable in class tpp.TPPModelEvent
The values of the data set have been changed
ProjectionConstraint - Interface in tpp
A constraint on what constitutes a valid projection.
ProjectionTable - Class in tpp
The extensions to JTable deal with color rendering, changing values and selections, and adding the table sorter and copy/paste functionality.
ProjectionTable(ScatterPlotModel) - Constructor for class tpp.ProjectionTable
 
ProjectionTableListSelectionModel - Class in tpp
Select rows in the Projection Table based on the selection in the TPP Model
ProjectionTableListSelectionModel(ScatterPlotModel, RowSorter<ProjectionTableModel>) - Constructor for class tpp.ProjectionTableListSelectionModel
 
ProjectionTableModel - Class in tpp
 
ProjectionTableModel(ScatterPlotModel) - Constructor for class tpp.ProjectionTableModel
 
pursuePerturbation() - Method in interface tpp.PerturbationPursuit
 
pursuePerturbation() - Method in class tpp.SeparatePoints
Find a view that better separates the points
pursuePerturbation() - Method in class tpp.SeparatePointsInScatterPlot
Find a view that better separates the points
pursuePerturbation() - Method in class tpp.SmoothSeries
Find the perturbations necessary to untangle the currently viewed series by moving each point nearer to any connected ones.
pursueTarget(Matrix, Matrix) - Method in class tpp.LinearProjection
 
pursueTarget(Matrix, Matrix, boolean[]) - Method in class tpp.LinearProjection
Try to find a projection that best maps the data to the target.
pursueTarget(Matrix, Matrix) - Method in interface tpp.Projection
Find the projection that best maps the data to the target.
pursueTarget() - Method in class tpp.TPPModel
Pursue a projection that will map the target onto the projection until convergence.
pursueTargetSingleShot(Matrix, Matrix, boolean[]) - Method in class tpp.LinearProjection
 
pursueTargetSingleShot() - Method in class tpp.TPPModel
Pursue a projection that will map the target onto the projection, but just take a single step.

R

randomize() - Method in class tpp.LinearProjection
Set all projection values to a random values in [-1,1]
randomProjection() - Method in class tpp.TPPModel
 
rank(double[]) - Static method in class tpp.MatrixUtils
Sort the array of doubles, returning the indices of the doubles in order of size -- largest first
rankedAttributes() - Method in class weka.attributeSelection.TPPAttributeSearch
 
readDoubles(File, String, boolean) - Method in class tpp.TSVFileReader
 
readStrings(File, String, boolean) - Method in class tpp.TSVFileReader
 
Rectangle - Class in tpp
A 'rubber band' rectangle used to select points in a ScatterPlotViewPanel.
Rectangle(double, double, double, double) - Constructor for class tpp.Rectangle
 
Rectangle(Point2D, Point2D) - Constructor for class tpp.Rectangle
 
RECTANGLE_CHANGED - Static variable in class tpp.TPPModelEvent
The position or state of selection rectangle has changed
RectangleMovementListener - Class in tpp
Responds to movements of a rectangular selection of points by using projection pursuit
RectangleMovementListener(ScatterPlotModel) - Constructor for class tpp.RectangleMovementListener
Create perturbations that describe how incremental changes to the selected points by the user will alter the target view in a scatter plot
rectangleScaled(double, double) - Method in class tpp.RectangleMovementListener
The rectangle has been scaled in the x and y directions
rectangleTranslated(double, double) - Method in class tpp.RectangleMovementListener
Move the rectangle by the given increments
remove(Object) - Method in class tpp.HierarchicalCluster
 
removeAttribute(int) - Method in class tpp.LinearProjection
Create a new projection by removing a single attribute (row)
removeAttribute(Attribute) - Method in class tpp.ScatterPlotModel
Remove an attribute, returning the values
removeAttribute(Attribute) - Method in class tpp.TPPModel
Remove an attribute, returning the values
removeAttributes(Vector<Attribute>) - Method in class tpp.ScatterPlotModel
remove multiple attributes
removeGraph() - Method in class tpp.ScatterPlotModel
 
removeGraph() - Method in class tpp.TPPModel
 
removeIndexInterval(int, int) - Method in class tpp.ProjectionTableListSelectionModel
 
removeRows(double[][], int[]) - Static method in class tpp.MatrixUtils
 
removeSeries() - Method in class tpp.ScatterPlotModel
 
removeSeries() - Method in class tpp.TPPModel
 
removeTestSet() - Method in class tpp.TPPModel
 
resizePlot(int, int) - Method in class tpp.ScatterPlotModel
Resize the scatter plot so that it fits in the new window size
resizePlot() - Method in class tpp.ScatterPlotModel
Rescale the scatter plot so that it fits into the existing window
RETINAL_ATTRIBUTE_CHANGED - Static variable in class tpp.TPPModelEvent
The retinal attributes used to draw the point markers has changed
rowNorm2(Matrix) - Static method in class tpp.MatrixUtils
Return an array comprising the Euclidean norm of each row
run() - Method in class tpp.PerturbationPursuitThread
 

S

scale(double, double, double, double) - Method in class tpp.Rectangle
Scale the rectangle, by moving a corner from its original location (ox,oy) by a displacement of (dx,dy).
scale(double, double) - Method in class tpp.Rectangle
Increase the size of the rectangle by zx in the x direction, zy in the y.
ScatterPlotControlPanel - Class in tpp
An extension of JPanel that includes the controls and projections for a data set
ScatterPlotControlPanel() - Constructor for class tpp.ScatterPlotControlPanel
 
ScatterPlotModel - Class in tpp
A TPPModel with added members for allowing it to be presented and manipulated using via a Scatter Plot GUI
ScatterPlotModel(int) - Constructor for class tpp.ScatterPlotModel
 
ScatterPlotViewPanel - Class in tpp
Panel with a view of a set of instances that can be manipulated thru projection pursuit
ScatterPlotViewPanel() - Constructor for class tpp.ScatterPlotViewPanel
 
search(ASEvaluation, Instances) - Method in class weka.attributeSelection.TPPAttributeSearch
Use TPP to select attributes.
searchTipText() - Method in class weka.classifiers.meta.UnbiasedAttributeSelectedClassifier
Returns the tip text for this property
selectAttribute(int) - Method in class tpp.ProjectionTable
 
selectAxes(int[]) - Method in class tpp.ScatterPlotModel
Add axes to the selection
selectAxesByRectangle() - Method in class tpp.ScatterPlotModel
Select any axes within the rectangle
selectAxis(int) - Method in class tpp.ScatterPlotModel
Add a axis to the selection
SelectButton - Class in tpp
A button used to select points based on the value of a particular attribute.
SelectButton(ScatterPlotModel, String) - Constructor for class tpp.SelectButton
Construct a button representing a particular class
SelectButton(ScatterPlotModel, double, double) - Constructor for class tpp.SelectButton
Construct a button representing a numeric range
SelectionPanel - Class in tpp
A panel including buttons that allow the user to select points based on the value of the SelectAttribute
SelectionPanel(ScatterPlotModel) - Constructor for class tpp.SelectionPanel
 
selectPoint(int) - Method in class tpp.TPPModel
 
selectPoints(int[]) - Method in class tpp.TPPModel
 
selectPointsByClassValue(String, boolean) - Method in class tpp.ScatterPlotModel
Select the points whose value of the selection attribute is equal to the given value
selectPointsByNumericRange(double, double, boolean) - Method in class tpp.ScatterPlotModel
Select the points whose value of the selection attribute is in the given range.
selectPointsByRectangle() - Method in class tpp.ScatterPlotModel
Select any points within the rectangle
selectSingleAttribute(Attribute) - Method in class tpp.TPPModel
Select a single numeric attribute
SeparatePoints - Class in tpp
A TargetPerturbation that will perturb the target so that the distribution of points better reflects the value of the separation attribute defined on the TPPModel.
SeparatePoints(TPPModel) - Constructor for class tpp.SeparatePoints
 
SeparatePointsButton - Class in tpp
 
SeparatePointsButton(ScatterPlotModel, JComboBox) - Constructor for class tpp.SeparatePointsButton
 
SeparatePointsInScatterPlot - Class in tpp
Extension of SeparatePoints for viewing the resulting distribution in a scatter plot.
SeparatePointsInScatterPlot(TPPModel) - Constructor for class tpp.SeparatePointsInScatterPlot
 
SEQ_COL - Static variable in class tpp.ProjectionTableModel
 
Series - Class in tpp
Represents a set of series in the data.
Series(Instances, String, String) - Constructor for class tpp.Series
Create a series given just the names of the two attributes.
Series(Instances, Attribute, Attribute) - Constructor for class tpp.Series
 
setActive(boolean) - Method in class tpp.TPPPerspective
Make this perspective the active (visible) one in the KF
setColourAttribute(Attribute) - Method in class tpp.ScatterPlotModel
 
setColours(ColourScheme) - Method in class tpp.ScatterPlotControlPanel
 
setColours(ColourScheme) - Method in class tpp.ScatterPlotModel
Set the color scheme
setColumn(Matrix, int, double[]) - Static method in class tpp.MatrixUtils
 
setColumn(Matrix, int, double) - Static method in class tpp.MatrixUtils
 
setColumnComparator(Class, Comparator) - Method in class tpp.TableSorter
 
setConvergenceLimit(double) - Method in class weka.attributeSelection.TPPAttributeSearch
The limit at which TPP is treated as converged
setEpochLimit(int) - Method in class weka.attributeSelection.TPPAttributeSearch
The maximum number of training cycles that TPP should run for
setEvaluator(ASEvaluation) - Method in class weka.classifiers.meta.UnbiasedAttributeSelectedClassifier
Sets the attribute evaluator
setExplorer(Explorer) - Method in class tpp.TPPExplorerPanel
 
setFillAttribute(Attribute) - Method in class tpp.ScatterPlotModel
 
setGenerateRanking(boolean) - Method in class weka.attributeSelection.TPPAttributeSearch
Whether to rank the selected attributes.
setInstances(Instances) - Method in class tpp.ScatterPlotModel
 
setInstances(Instances) - Method in class tpp.TPPExplorerPanel
 
setInstances(Instances) - Method in class tpp.TPPModel
 
setInstances(Instances) - Method in class tpp.TPPPanel
 
setJTable(JTable) - Method in class tpp.ExcelAdapter
 
setLoaded(boolean) - Method in class tpp.TPPPerspective
Tell this perspective whether or not it is part of the users perspectives toolbar in the KnowledgeFlow.
setMainKFPerspective(KnowledgeFlowApp.MainKFPerspective) - Method in class tpp.TPPPerspective
Set a reference to the main KnowledgeFlow perspective - i.e.
setMarkerSize(double) - Method in class tpp.ScatterPlotModel
 
setModel(TPPModel) - Method in class tpp.ProjectionTableModel
 
setModel(ScatterPlotModel) - Method in class tpp.ScatterPlotControlPanel
 
setModel(ScatterPlotModel) - Method in class tpp.ScatterPlotViewPanel
Load the data panel with the instances to be displayed
setModel(TPPModel) - Method in class tpp.SmoothSeries
 
setNumOutputDimensions(int) - Method in class weka.attributeSelection.TPPAttributeSearch
The number of output dimensions (default=2)
setNumToPreSelect(int) - Method in class weka.attributeSelection.TPPAttributeSearch
The number of attributes to preselect using IG.
setNumToSelect(int) - Method in class weka.attributeSelection.TPPAttributeSearch
The number of attributes to select.
setOptions(String[]) - Method in class weka.attributeSelection.TPPAttributeSearch
Parses a given list of options.
setOptions(String[]) - Method in class weka.classifiers.meta.UnbiasedAttributeSelectedClassifier
Parses a given list of options.
setPerturbation(PerturbationPursuit) - Method in class tpp.PerturbationPursuitThread
 
setProjectionConstraint(ProjectionConstraint) - Method in class tpp.TPPModel
Set a constraint on what constitutes a valid projection.
setProjectionValues(double[][]) - Method in class tpp.TPPModel
 
setRow(Matrix, int, double[]) - Static method in class tpp.MatrixUtils
 
setSearch(ASSearch) - Method in class weka.classifiers.meta.UnbiasedAttributeSelectedClassifier
Sets the search method
setSelectAttribute(Attribute) - Method in class tpp.ScatterPlotModel
 
setSelectedAttribute(Attribute) - Method in class tpp.AttributeCombo
 
setSelectionInterval(int, int) - Method in class tpp.ProjectionTableListSelectionModel
 
setSeparationAttribute(Attribute) - Method in class tpp.TPPModel
The attribute used to separate points
setShapeAttribute(Attribute) - Method in class tpp.ScatterPlotModel
 
setShowAxes(boolean) - Method in class tpp.ScatterPlotModel
Whether to show axes
setShowAxisLabels(boolean) - Method in class tpp.ScatterPlotModel
Whether or not to show axis labels.
setShowGraph(boolean) - Method in class tpp.ScatterPlotModel
 
setShowHierarchicalClustering(boolean) - Method in class tpp.ScatterPlotModel
 
setShowSeries(boolean) - Method in class tpp.ScatterPlotModel
Show any series in the data
setShowTarget(boolean) - Method in class tpp.ScatterPlotModel
 
setShowView(boolean) - Method in class weka.attributeSelection.TPPAttributeSearch
Whether to show the projected data as it is separated
setSizeAttribute(Attribute) - Method in class tpp.ScatterPlotModel
 
setSortingStatus(int, int) - Method in class tpp.TableSorter
 
setTableHeader(JTableHeader) - Method in class tpp.TableSorter
 
setTableModel(TableModel) - Method in class tpp.TableSorter
 
setTarget(Matrix) - Method in class tpp.TPPModel
Set the target that the projection is pursuing
setThreshold(double) - Method in class weka.attributeSelection.TPPAttributeSearch
 
setValueAt(Object, int, int) - Method in class tpp.ProjectionTableModel
 
setValueAt(Object, int, int) - Method in class tpp.TableSorter
 
setX1(double) - Method in class tpp.Rectangle
 
setX2(double) - Method in class tpp.Rectangle
 
setY1(double) - Method in class tpp.Rectangle
 
setY2(double) - Method in class tpp.Rectangle
 
showAxes() - Method in class tpp.ScatterPlotModel
 
showAxisLabels() - Method in class tpp.ScatterPlotModel
Whether or not to show axis labels.
showGraph() - Method in class tpp.ScatterPlotModel
 
showHierarchicalClustering() - Method in class tpp.ScatterPlotModel
 
showSeries() - Method in class tpp.ScatterPlotModel
 
showTarget() - Method in class tpp.ScatterPlotModel
 
SIG_COL - Static variable in class tpp.ProjectionTableModel
 
singleLinkage(TPPModel) - Method in class tpp.HierarchicalAgglomerativeClustering
HAC using single linkage clustering
size() - Method in class tpp.HierarchicalCluster
 
SmoothButton - Class in tpp
 
SmoothButton(ScatterPlotModel) - Constructor for class tpp.SmoothButton
 
SmoothSeries - Class in tpp
Smooth series in a scatter plot
SmoothSeries(ScatterPlotModel) - Constructor for class tpp.SmoothSeries
 
stateChanged(ChangeEvent) - Method in class tpp.ScatterPlotControlPanel
Marker slider state has changed
stdev(double[]) - Static method in class tpp.MatrixUtils
Find the stdev of an array of doubles.
stopPerturbationPursuit() - Method in class tpp.PerturbationPursuitThread
Calling this method pauses the pertubation pursuit whilst preserving the life of the thread.

T

TableSorter - Class in tpp
TableSorter is a decorator for TableModels; adding sorting functionality to a supplied TableModel.
TableSorter() - Constructor for class tpp.TableSorter
 
TableSorter(TableModel) - Constructor for class tpp.TableSorter
 
TableSorter(TableModel, JTableHeader) - Constructor for class tpp.TableSorter
 
TargetedProjectionPursuit - Class in tpp
 
TargetedProjectionPursuit() - Constructor for class tpp.TargetedProjectionPursuit
 
times(double[], double) - Static method in class tpp.MatrixUtils
times a by d.
times(double[][], double[][]) - Static method in class tpp.MatrixUtils
matrix multiplication
times(double[], double[][]) - Static method in class tpp.MatrixUtils
Multiply a row by a matrix
toString() - Method in class tpp.ColourScheme
 
toString() - Method in class tpp.HierarchicalCluster
 
toString(double[]) - Static method in class tpp.MatrixUtils
 
toString(int[]) - Static method in class tpp.MatrixUtils
 
toString(double[][]) - Static method in class tpp.MatrixUtils
 
toString() - Method in class tpp.Rectangle
 
toString() - Method in class tpp.Series
 
toString(int) - Method in class tpp.TPPModel
 
toString() - Method in class tpp.TPPModelEvent
 
toString() - Method in class weka.attributeSelection.TPPAttributeSearch
 
toString() - Method in class weka.classifiers.meta.UnbiasedAttributeSelectedClassifier
Output a representation of this classifier
tpp - package tpp
 
TPPAttributeEvaluation - Class in weka.attributeSelection
A dummy attribute evaluator to be used by TPPAttributeSearch
TPPAttributeEvaluation() - Constructor for class weka.attributeSelection.TPPAttributeEvaluation
 
TPPAttributeSearch - Class in weka.attributeSelection
Class that uses Targeted Projection Pursuit as a attribute selection algorithm.
TPPAttributeSearch() - Constructor for class weka.attributeSelection.TPPAttributeSearch
 
TPPException - Exception in tpp
 
TPPException(String) - Constructor for exception tpp.TPPException
 
TPPExplorerPanel - Class in tpp
An ExplorerPanel for Targeted Projection Pursuit.
TPPExplorerPanel() - Constructor for class tpp.TPPExplorerPanel
 
TPPFrame - Class in tpp
A Frame that allows the user to manipulate views of a (categorised) data set loaded from a data file.
TPPFrame() - Constructor for class tpp.TPPFrame
 
TPPModel - Class in tpp
A class that represents the TPP model: ie the original data, the current target and view, and the associated methods for manipulating these.
TPPModel(int) - Constructor for class tpp.TPPModel
Construct a new TPP model with the given output dimension
TPPModelEvent - Class in tpp
An event indicating that a TPPModel has been changed.
TPPModelEvent(TPPModel, int) - Constructor for class tpp.TPPModelEvent
 
TPPModelEventListener - Interface in tpp
 
TPPPanel - Class in tpp
A panel for performing TPP which does everything except load the data.
TPPPanel() - Constructor for class tpp.TPPPanel
 
TPPPanel(LayoutManager) - Constructor for class tpp.TPPPanel
 
TPPPanel(boolean) - Constructor for class tpp.TPPPanel
 
TPPPanel(LayoutManager, boolean) - Constructor for class tpp.TPPPanel
 
TPPPerspective - Class in tpp
A KnowledgeFlow Perspective for Targeted Projection Pursuit
TPPPerspective() - Constructor for class tpp.TPPPerspective
 
train(Matrix, Matrix, boolean[], double[][], double) - Method in class tpp.LinearProjection
 
translate(double, double) - Method in class tpp.Rectangle
Translate the position of the rectangle by the given amount
transpose(double[][]) - Static method in class tpp.MatrixUtils
 
TSVFileReader - Class in tpp
A generic class for reading TSV and CSV files.
TSVFileReader() - Constructor for class tpp.TSVFileReader
 

U

UnbiasedAttributeSelectedClassifier - Class in weka.classifiers.meta
Dimensionality of training and test data is reduced by attribute selection before being passed on to a classifier.
UnbiasedAttributeSelectedClassifier() - Constructor for class weka.classifiers.meta.UnbiasedAttributeSelectedClassifier
Default constructor.
undo() - Method in class tpp.ScatterPlotModel
Undo any changes back to the previous snapshot
uniformProjection() - Method in class tpp.TPPModel
Create uniform projection in which each attribute has unit weight.
unipolarColorColumn(int) - Method in class tpp.ProjectionTableModel
Should this column be colored along a unipolar spectrum?
unselectAxes() - Method in class tpp.ScatterPlotModel
Unselect the axes
unselectAxis(int) - Method in class tpp.ScatterPlotModel
 
unselectPoints() - Method in class tpp.TPPModel
 

W

weka.attributeSelection - package weka.attributeSelection
 
weka.classifiers.meta - package weka.classifiers.meta
 
width() - Method in class tpp.Rectangle
 
windowActivated(WindowEvent) - Method in class weka.attributeSelection.TPPAttributeSearch
 
windowClosed(WindowEvent) - Method in class weka.attributeSelection.TPPAttributeSearch
 
windowClosing(WindowEvent) - Method in class weka.attributeSelection.TPPAttributeSearch
 
windowDeactivated(WindowEvent) - Method in class weka.attributeSelection.TPPAttributeSearch
 
windowDeiconified(WindowEvent) - Method in class weka.attributeSelection.TPPAttributeSearch
 
windowIconified(WindowEvent) - Method in class weka.attributeSelection.TPPAttributeSearch
 
windowOpened(WindowEvent) - Method in class weka.attributeSelection.TPPAttributeSearch
 

X

X_COL - Static variable in class tpp.ProjectionTableModel
 

Y

Y_COL - Static variable in class tpp.ProjectionTableModel
 

Z

ZeroConstraint - Class in tpp
Clamp the weights of the specified attributes to zero
ZeroConstraint(int[]) - Constructor for class tpp.ZeroConstraint
Specify which attributes to clamp at zero
zeroProjectionAttributes(int[]) - Method in class tpp.TPPModel
Set the input from the selected attributes to zero -- ie remove them temporarily from teh projection

A B C D E F G H I L M N O P R S T U W X Y Z