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Index
Index
_
|
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
J
|
K
|
L
|
M
|
N
|
O
|
P
|
Q
|
R
|
S
|
T
|
U
|
V
|
W
|
X
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Y
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Z
_
__add__() (hail.expr.expressions.ArrayNumericExpression method)
(hail.expr.expressions.NumericExpression method)
(hail.expr.expressions.StringExpression method)
__and__() (hail.expr.expressions.BooleanExpression method)
__eq__() (hail.expr.expressions.Expression method)
__floordiv__() (hail.expr.expressions.ArrayNumericExpression method)
(hail.expr.expressions.NumericExpression method)
__ge__() (hail.expr.expressions.NumericExpression method)
__getitem__() (hail.expr.expressions.ArrayExpression method)
(hail.expr.expressions.CallExpression method)
(hail.expr.expressions.DictExpression method)
(hail.expr.expressions.StringExpression method)
(hail.expr.expressions.StructExpression method)
__gt__() (hail.expr.expressions.NumericExpression method)
__invert__() (hail.expr.expressions.BooleanExpression method)
__le__() (hail.expr.expressions.NumericExpression method)
__lt__() (hail.expr.expressions.NumericExpression method)
__mod__() (hail.expr.expressions.ArrayNumericExpression method)
(hail.expr.expressions.NumericExpression method)
__mul__() (hail.expr.expressions.ArrayNumericExpression method)
(hail.expr.expressions.NumericExpression method)
__ne__() (hail.expr.expressions.Expression method)
__neg__() (hail.expr.expressions.ArrayNumericExpression method)
(hail.expr.expressions.NumericExpression method)
__or__() (hail.expr.expressions.BooleanExpression method)
__pow__() (hail.expr.expressions.ArrayNumericExpression method)
(hail.expr.expressions.NumericExpression method)
__sub__() (hail.expr.expressions.ArrayNumericExpression method)
(hail.expr.expressions.NumericExpression method)
A
abs() (hail.linalg.BlockMatrix method)
(in module hail.expr.functions)
add() (hail.expr.expressions.SetExpression method)
add_col_index() (hail.MatrixTable method)
add_index() (hail.Table method)
add_liftover() (hail.genetics.ReferenceGenome method)
add_row_index() (hail.MatrixTable method)
add_sequence() (hail.genetics.ReferenceGenome method)
aggregate() (hail.GroupedMatrixTable method)
(hail.GroupedTable method)
(hail.Table method)
aggregate_cols() (hail.GroupedMatrixTable method)
(hail.MatrixTable method)
aggregate_entries() (hail.GroupedMatrixTable method)
(hail.MatrixTable method)
aggregate_rows() (hail.GroupedMatrixTable method)
(hail.MatrixTable method)
all() (hail.expr.expressions.CollectionExpression method)
(hail.Table method)
(in module hail.expr.aggregators)
(in module hail.expr.functions)
allele_type() (in module hail.expr.functions)
alleles (hail.genetics.Call attribute)
annotate() (hail.expr.expressions.StructExpression method)
(hail.Table method)
(hail.utils.Struct method)
annotate_cols() (hail.MatrixTable method)
annotate_entries() (hail.MatrixTable method)
annotate_globals() (hail.MatrixTable method)
(hail.Table method)
annotate_rows() (hail.MatrixTable method)
any() (hail.expr.expressions.CollectionExpression method)
(hail.Table method)
(in module hail.expr.aggregators)
(in module hail.expr.functions)
append() (hail.expr.expressions.ArrayExpression method)
approx_equal() (in module hail.expr.functions)
argmax() (in module hail.expr.functions)
argmin() (in module hail.expr.functions)
array() (in module hail.expr.functions)
array_scan() (in module hail.expr.functions)
array_sum() (in module hail.expr.aggregators)
array_windows() (in module hail.linalg.utils)
ArrayExpression (class in hail.expr.expressions)
ArrayNumericExpression (class in hail.expr.expressions)
B
balding_nichols_model() (in module hail.methods)
bind() (in module hail.expr.functions)
binom_test() (in module hail.expr.functions)
block_size (hail.linalg.BlockMatrix attribute)
BlockMatrix (class in hail.linalg)
bool() (in module hail.expr.functions)
BooleanExpression (class in hail.expr.expressions)
C
cache() (hail.linalg.BlockMatrix method)
(hail.MatrixTable method)
(hail.Table method)
Call (class in hail.genetics)
call() (in module hail.expr.functions)
call_stats() (in module hail.expr.aggregators)
CallExpression (class in hail.expr.expressions)
case() (in module hail.expr.functions)
CaseBuilder (class in hail.expr.builders)
ceil() (in module hail.expr.functions)
chi_squared_test() (in module hail.expr.functions)
choose_cols() (hail.MatrixTable method)
coalesce() (in module hail.expr.functions)
col (hail.MatrixTable attribute)
col_key (hail.MatrixTable attribute)
col_value (hail.MatrixTable attribute)
collect() (hail.expr.expressions.Expression method)
(hail.Table method)
(in module hail.expr.aggregators)
collect_as_set() (in module hail.expr.aggregators)
collect_by_key() (hail.Table method)
collect_cols_by_key() (hail.MatrixTable method)
CollectionExpression (class in hail.expr.expressions)
cols() (hail.MatrixTable method)
complete_trios() (hail.genetics.Pedigree method)
compute_neg_log_reml() (hail.stats.LinearMixedModel method)
concordance() (in module hail.methods)
cond() (in module hail.expr.functions)
contains() (hail.expr.expressions.ArrayExpression method)
(hail.expr.expressions.DictExpression method)
(hail.expr.expressions.IntervalExpression method)
(hail.expr.expressions.SetExpression method)
(hail.expr.expressions.StringExpression method)
(hail.utils.Interval method)
contig (hail.expr.expressions.LocusExpression attribute)
(hail.genetics.Locus attribute)
contig_length() (hail.genetics.ReferenceGenome method)
contigs (hail.genetics.ReferenceGenome attribute)
contingency_table_test() (in module hail.expr.functions)
copy_log() (in module hail.utils)
corr() (in module hail.expr.aggregators)
(in module hail.expr.functions)
count() (hail.MatrixTable method)
(hail.Table method)
(in module hail.expr.aggregators)
count_cols() (hail.MatrixTable method)
count_rows() (hail.MatrixTable method)
count_where() (in module hail.expr.aggregators)
counter() (in module hail.expr.aggregators)
cumulative_histogram() (in module hail.plot)
cumulative_sum() (in module hail.expr.functions)
D
dbeta() (in module hail.expr.functions)
de_novo() (in module hail.methods)
default() (hail.expr.builders.CaseBuilder method)
(hail.expr.builders.SwitchBuilder method)
default_block_size() (hail.linalg.BlockMatrix static method)
default_reference() (in module hail)
delimit() (in module hail.expr.functions)
densify() (hail.linalg.BlockMatrix method)
describe() (hail.expr.expressions.Expression method)
(hail.GroupedMatrixTable method)
(hail.MatrixTable method)
(hail.Table method)
diagonal() (hail.linalg.BlockMatrix method)
dict() (in module hail.expr.functions)
DictExpression (class in hail.expr.expressions)
difference() (hail.expr.expressions.SetExpression method)
distinct() (hail.Table method)
distinct_by_col() (hail.MatrixTable method)
distinct_by_row() (hail.MatrixTable method)
downcode() (in module hail.expr.functions)
downsample() (in module hail.expr.aggregators)
dpois() (in module hail.expr.functions)
drop() (hail.expr.expressions.StructExpression method)
(hail.MatrixTable method)
(hail.Table method)
(hail.utils.Struct method)
drop_cols() (hail.MatrixTable method)
drop_rows() (hail.MatrixTable method)
dtype (hail.expr.expressions.Expression attribute)
dtype() (in module hail.expr.types)
E
element_type (hail.expr.types.tarray attribute)
(hail.expr.types.tset attribute)
empty_array() (in module hail.expr.functions)
empty_set() (in module hail.expr.functions)
end (hail.expr.expressions.IntervalExpression attribute)
(hail.utils.Interval attribute)
endswith() (hail.expr.expressions.StringExpression method)
entries() (hail.linalg.BlockMatrix method)
(hail.MatrixTable method)
entropy() (in module hail.expr.functions)
entry (hail.MatrixTable attribute)
eval() (in module hail.expr.functions)
exp() (in module hail.expr.functions)
expand_types() (hail.Table method)
explode() (hail.Table method)
(in module hail.expr.aggregators)
explode_cols() (hail.MatrixTable method)
explode_rows() (hail.MatrixTable method)
explode_trio_matrix() (in module hail.experimental)
export() (hail.linalg.BlockMatrix static method)
(hail.Table method)
export_elasticsearch() (in module hail.methods)
export_gen() (in module hail.methods)
export_plink() (in module hail.methods)
export_rectangles() (hail.linalg.BlockMatrix static method)
export_vcf() (in module hail.methods)
Expression (class in hail.expr.expressions)
extend() (hail.expr.expressions.ArrayExpression method)
F
fam_id (hail.genetics.Trio attribute)
fields (hail.expr.types.tstruct attribute)
fill() (hail.linalg.BlockMatrix class method)
filter() (hail.expr.expressions.CollectionExpression method)
(hail.Table method)
(hail.linalg.BlockMatrix method)
(in module hail.expr.aggregators)
(in module hail.expr.functions)
filter_alleles() (in module hail.methods)
filter_alleles_hts() (in module hail.methods)
filter_cols() (hail.linalg.BlockMatrix method)
(hail.MatrixTable method)
filter_entries() (hail.MatrixTable method)
filter_intervals() (in module hail.methods)
filter_rows() (hail.linalg.BlockMatrix method)
(hail.MatrixTable method)
filter_to() (hail.genetics.Pedigree method)
filtering_allele_frequency() (in module hail.experimental)
find() (hail.expr.expressions.CollectionExpression method)
(in module hail.expr.functions)
first_match_in() (hail.expr.expressions.StringExpression method)
fisher_exact_test() (in module hail.expr.functions)
fit() (hail.stats.LinearMixedModel method)
fit_alternatives() (hail.stats.LinearMixedModel method)
fit_alternatives_numpy() (hail.stats.LinearMixedModel method)
flatmap() (hail.expr.expressions.CollectionExpression method)
(in module hail.expr.functions)
flatten() (hail.Table method)
(in module hail.expr.functions)
float() (in module hail.expr.functions)
float32() (in module hail.expr.functions)
Float32Expression (class in hail.expr.expressions)
float64() (in module hail.expr.functions)
Float64Expression (class in hail.expr.expressions)
floor() (in module hail.expr.functions)
fold() (hail.expr.expressions.CollectionExpression method)
(in module hail.expr.functions)
format() (in module hail.expr.functions)
fraction() (in module hail.expr.aggregators)
from_entry_expr() (hail.linalg.BlockMatrix class method)
from_fasta_file() (hail.genetics.ReferenceGenome class method)
from_kinship() (hail.stats.LinearMixedModel class method)
from_numpy() (hail.linalg.BlockMatrix class method)
from_pandas() (hail.Table static method)
from_random_effects() (hail.stats.LinearMixedModel class method)
from_rows_table() (hail.MatrixTable class method)
from_spark() (hail.Table static method)
fromfile() (hail.linalg.BlockMatrix class method)
G
genetic_relatedness_matrix() (in module hail.methods)
get() (hail.expr.expressions.DictExpression method)
get_1kg() (in module hail.utils)
get_movie_lens() (in module hail.utils)
get_reference() (in module hail)
get_sequence() (in module hail.expr.functions)
get_vcf_metadata() (in module hail.methods)
global_position() (hail.expr.expressions.LocusExpression method)
globals (hail.MatrixTable attribute)
(hail.Table attribute)
globals_table() (hail.MatrixTable method)
gp_dosage() (in module hail.expr.functions)
grep() (in module hail.methods)
group_by() (hail.expr.expressions.CollectionExpression method)
(hail.Table method)
(in module hail.expr.aggregators)
(in module hail.expr.functions)
group_cols_by() (hail.GroupedMatrixTable method)
(hail.MatrixTable method)
group_rows_by() (hail.GroupedMatrixTable method)
(hail.MatrixTable method)
GroupedMatrixTable (class in hail)
GroupedTable (class in hail)
H
h_sq_normalized_lkhd() (hail.stats.LinearMixedModel method)
hadoop_copy() (in module hail.utils)
hadoop_exists() (in module hail.utils)
hadoop_is_dir() (in module hail.utils)
hadoop_is_file() (in module hail.utils)
hadoop_ls() (in module hail.utils)
hadoop_open() (in module hail.utils)
hadoop_stat() (in module hail.utils)
hail_metadata() (in module hail.experimental)
HailType (class in hail.expr.types)
hamming() (in module hail.expr.functions)
hardy_weinberg_test() (in module hail.expr.aggregators)
(in module hail.expr.functions)
has_liftover() (hail.genetics.ReferenceGenome method)
has_sequence() (hail.genetics.ReferenceGenome method)
head() (hail.MatrixTable method)
(hail.Table method)
hist() (in module hail.expr.aggregators)
histogram() (in module hail.plot)
hwe_normalized_pca() (in module hail.methods)
I
identity_by_descent() (in module hail.methods)
import_bed() (in module hail.methods)
import_bgen() (in module hail.methods)
import_fam() (in module hail.methods)
import_gen() (in module hail.methods)
import_locus_intervals() (in module hail.methods)
import_matrix_table() (in module hail.methods)
import_plink() (in module hail.methods)
import_table() (in module hail.methods)
import_vcf() (in module hail.methods)
impute_sex() (in module hail.methods)
in_autosome() (hail.expr.expressions.LocusExpression method)
in_autosome_or_par() (hail.expr.expressions.LocusExpression method)
in_mito() (hail.expr.expressions.LocusExpression method)
in_x_nonpar() (hail.expr.expressions.LocusExpression method)
in_x_par() (hail.expr.expressions.LocusExpression method)
in_y_nonpar() (hail.expr.expressions.LocusExpression method)
in_y_par() (hail.expr.expressions.LocusExpression method)
inbreeding() (in module hail.expr.aggregators)
includes_end (hail.expr.expressions.IntervalExpression attribute)
(hail.utils.Interval attribute)
includes_start (hail.expr.expressions.IntervalExpression attribute)
(hail.utils.Interval attribute)
index() (hail.Table method)
index_bgen() (in module hail.methods)
index_cols() (hail.MatrixTable method)
index_entries() (hail.MatrixTable method)
index_globals() (hail.MatrixTable method)
(hail.Table method)
index_rows() (hail.MatrixTable method)
info_score() (in module hail.expr.aggregators)
init() (in module hail)
int() (in module hail.expr.functions)
int32() (in module hail.expr.functions)
Int32Expression (class in hail.expr.expressions)
int64() (in module hail.expr.functions)
Int64Expression (class in hail.expr.expressions)
intersection() (hail.expr.expressions.SetExpression method)
Interval (class in hail.utils)
interval() (in module hail.expr.functions)
IntervalExpression (class in hail.expr.expressions)
is_complete() (hail.genetics.Trio method)
is_complex() (in module hail.expr.functions)
is_defined() (in module hail.expr.functions)
is_deletion() (in module hail.expr.functions)
is_diploid() (hail.expr.expressions.CallExpression method)
(hail.genetics.Call method)
is_female (hail.genetics.Trio attribute)
is_finite() (in module hail.expr.functions)
is_haploid() (hail.expr.expressions.CallExpression method)
(hail.genetics.Call method)
is_het() (hail.expr.expressions.CallExpression method)
(hail.genetics.Call method)
is_het_non_ref() (hail.expr.expressions.CallExpression method)
(hail.genetics.Call method)
is_het_ref() (hail.expr.expressions.CallExpression method)
(hail.genetics.Call method)
is_hom_ref() (hail.expr.expressions.CallExpression method)
(hail.genetics.Call method)
is_hom_var() (hail.expr.expressions.CallExpression method)
(hail.genetics.Call method)
is_indel() (in module hail.expr.functions)
is_infinite() (in module hail.expr.functions)
is_insertion() (in module hail.expr.functions)
is_male (hail.genetics.Trio attribute)
is_missing() (in module hail.expr.functions)
is_mnp() (in module hail.expr.functions)
is_nan() (in module hail.expr.functions)
is_non_ref() (hail.expr.expressions.CallExpression method)
(hail.genetics.Call method)
is_snp() (in module hail.expr.functions)
is_sparse (hail.linalg.BlockMatrix attribute)
is_star() (in module hail.expr.functions)
is_strand_ambiguous() (in module hail.expr.functions)
is_subset() (hail.expr.expressions.SetExpression method)
is_transition() (in module hail.expr.functions)
is_transversion() (in module hail.expr.functions)
is_valid_contig() (in module hail.expr.functions)
is_valid_locus() (in module hail.expr.functions)
J
join() (hail.Table method)
json() (in module hail.expr.functions)
K
key (hail.Table attribute)
key_by() (hail.Table method)
key_cols_by() (hail.MatrixTable method)
key_rows_by() (hail.MatrixTable method)
key_set() (hail.expr.expressions.DictExpression method)
key_type (hail.expr.types.tdict attribute)
keys() (hail.expr.expressions.DictExpression method)
L
ld_matrix() (in module hail.methods)
ld_prune() (in module hail.methods)
ld_score() (in module hail.experimental)
len() (in module hail.expr.functions)
length() (hail.expr.expressions.CollectionExpression method)
(hail.expr.expressions.StringExpression method)
lengths (hail.genetics.ReferenceGenome attribute)
liftover() (in module hail.expr.functions)
linear_mixed_model() (in module hail.methods)
linear_mixed_regression() (in module hail.methods)
linear_regression() (in module hail.methods)
LinearMixedModel (class in hail.stats)
linreg() (in module hail.expr.aggregators)
literal() (in module hail.expr.functions)
load_dataset() (in module hail.experimental)
Locus (class in hail.genetics)
locus() (in module hail.expr.functions)
locus_from_global_position() (in module hail.expr.functions)
locus_interval() (in module hail.expr.functions)
locus_windows() (in module hail.linalg.utils)
LocusExpression (class in hail.expr.expressions)
log() (hail.linalg.BlockMatrix method)
(in module hail.expr.functions)
log10() (in module hail.expr.functions)
logistic_regression() (in module hail.methods)
lower() (hail.expr.expressions.StringExpression method)
M
make_table() (hail.MatrixTable method)
manhattan() (in module hail.plot)
map() (hail.expr.expressions.CollectionExpression method)
(in module hail.expr.functions)
map_values() (hail.expr.expressions.DictExpression method)
mat_id (hail.genetics.Trio attribute)
matches() (hail.expr.expressions.StringExpression method)
MatrixTable (class in hail)
max() (in module hail.expr.aggregators)
(in module hail.expr.functions)
maximal_independent_set() (in module hail.methods)
mean() (in module hail.expr.aggregators)
(in module hail.expr.functions)
median() (in module hail.expr.functions)
mendel_error_code() (in module hail.expr.functions)
mendel_errors() (in module hail.methods)
min() (in module hail.expr.aggregators)
(in module hail.expr.functions)
min_rep() (in module hail.expr.functions)
mt_contigs (hail.genetics.ReferenceGenome attribute)
N
n_alt_alleles() (hail.expr.expressions.CallExpression method)
(hail.genetics.Call method)
n_cols (hail.linalg.BlockMatrix attribute)
n_partitions() (hail.MatrixTable method)
(hail.Table method)
n_rows (hail.linalg.BlockMatrix attribute)
naive_coalesce() (hail.MatrixTable method)
name (hail.genetics.ReferenceGenome attribute)
nirvana() (in module hail.methods)
null() (in module hail.expr.functions)
NumericExpression (class in hail.expr.expressions)
O
one_hot_alleles() (hail.expr.expressions.CallExpression method)
(hail.genetics.Call method)
or_else() (in module hail.expr.functions)
or_error() (hail.expr.builders.CaseBuilder method)
or_missing() (hail.expr.builders.CaseBuilder method)
(hail.expr.builders.SwitchBuilder method)
(in module hail.expr.functions)
order_by() (hail.Table method)
overlaps() (hail.expr.expressions.IntervalExpression method)
(hail.utils.Interval method)
P
par (hail.genetics.ReferenceGenome attribute)
parallelize() (hail.Table class method)
parse() (hail.genetics.Locus class method)
parse_call() (in module hail.expr.functions)
parse_locus() (in module hail.expr.functions)
parse_locus_interval() (in module hail.expr.functions)
parse_variant() (in module hail.expr.functions)
partition_hint() (hail.GroupedMatrixTable method)
(hail.GroupedTable method)
pat_id (hail.genetics.Trio attribute)
pc_relate() (in module hail.methods)
pca() (in module hail.methods)
pchisqtail() (in module hail.expr.functions)
Pedigree (class in hail.genetics)
persist() (hail.linalg.BlockMatrix method)
(hail.MatrixTable method)
(hail.Table method)
phase_by_transmission() (in module hail.experimental)
phase_trio_matrix_by_transmission() (in module hail.experimental)
phased (hail.expr.expressions.CallExpression attribute)
(hail.genetics.Call attribute)
pl_dosage() (in module hail.expr.functions)
ploidy (hail.expr.expressions.CallExpression attribute)
(hail.genetics.Call attribute)
plot_roc_curve() (in module hail.experimental)
pnorm() (in module hail.expr.functions)
point_type (hail.expr.types.tinterval attribute)
(hail.utils.Interval attribute)
poisson_regression() (in module hail.methods)
position (hail.expr.expressions.LocusExpression attribute)
(hail.genetics.Locus attribute)
ppois() (in module hail.expr.functions)
pretty() (hail.expr.types.HailType method)
product() (in module hail.expr.aggregators)
(in module hail.expr.functions)
Q
qchisqtail() (in module hail.expr.functions)
qnorm() (in module hail.expr.functions)
qpois() (in module hail.expr.functions)
qq() (in module hail.plot)
R
rand_beta() (in module hail.expr.functions)
rand_bool() (in module hail.expr.functions)
rand_cat() (in module hail.expr.functions)
rand_dirichlet() (in module hail.expr.functions)
rand_gamma() (in module hail.expr.functions)
rand_norm() (in module hail.expr.functions)
rand_pois() (in module hail.expr.functions)
rand_unif() (in module hail.expr.functions)
random() (hail.linalg.BlockMatrix class method)
range() (in module hail.expr.functions)
range_matrix_table() (in module hail.utils)
range_table() (in module hail.utils)
read() (hail.genetics.Pedigree class method)
(hail.genetics.ReferenceGenome class method)
(hail.linalg.BlockMatrix class method)
read_matrix_table() (in module hail.methods)
read_table() (in module hail.methods)
realized_relationship_matrix() (in module hail.methods)
reference_genome (hail.expr.types.tlocus attribute)
(hail.genetics.Locus attribute)
ReferenceGenome (class in hail.genetics)
remove() (hail.expr.expressions.SetExpression method)
remove_liftover() (hail.genetics.ReferenceGenome method)
remove_sequence() (hail.genetics.ReferenceGenome method)
rename() (hail.MatrixTable method)
(hail.Table method)
rename_duplicates() (in module hail.methods)
repartition() (hail.MatrixTable method)
(hail.Table method)
replace() (hail.expr.expressions.StringExpression method)
result() (hail.GroupedMatrixTable method)
row (hail.MatrixTable attribute)
(hail.Table attribute)
row_correlation() (in module hail.methods)
row_key (hail.MatrixTable attribute)
row_value (hail.MatrixTable attribute)
(hail.Table attribute)
rows() (hail.MatrixTable method)
S
s (hail.genetics.Trio attribute)
sample() (hail.Table method)
sample_qc() (in module hail.methods)
sample_rows() (hail.MatrixTable method)
scan() (hail.expr.expressions.ArrayExpression method)
scatter() (in module hail.plot)
select() (hail.expr.expressions.StructExpression method)
(hail.Table method)
(hail.utils.Struct method)
select_cols() (hail.MatrixTable method)
select_entries() (hail.MatrixTable method)
select_globals() (hail.MatrixTable method)
(hail.Table method)
select_rows() (hail.MatrixTable method)
sequence_context() (hail.expr.expressions.LocusExpression method)
set() (in module hail.expr.functions)
set_global_seed() (in module hail)
SetExpression (class in hail.expr.expressions)
shape (hail.linalg.BlockMatrix attribute)
show() (hail.expr.expressions.Expression method)
(hail.Table method)
sign() (in module hail.expr.functions)
size() (hail.expr.expressions.CollectionExpression method)
(hail.expr.expressions.DictExpression method)
skat() (in module hail.methods)
sorted() (in module hail.expr.functions)
spark_context() (in module hail)
sparsify_band() (hail.linalg.BlockMatrix method)
sparsify_rectangles() (hail.linalg.BlockMatrix method)
sparsify_row_intervals() (hail.linalg.BlockMatrix method)
sparsify_triangle() (hail.linalg.BlockMatrix method)
split() (hail.expr.expressions.StringExpression method)
split_multi() (in module hail.methods)
split_multi_hts() (in module hail.methods)
sqrt() (hail.linalg.BlockMatrix method)
(in module hail.expr.functions)
start (hail.expr.expressions.IntervalExpression attribute)
(hail.utils.Interval attribute)
startswith() (hail.expr.expressions.StringExpression method)
stats() (in module hail.expr.aggregators)
stop() (in module hail)
str() (in module hail.expr.functions)
StringExpression (class in hail.expr.expressions)
strip() (hail.expr.expressions.StringExpression method)
Struct (class in hail.utils)
struct() (in module hail.expr.functions)
StructExpression (class in hail.expr.expressions)
sum() (hail.linalg.BlockMatrix method)
(in module hail.expr.aggregators)
(in module hail.expr.functions)
summarize_variants() (in module hail.methods)
svd() (hail.linalg.BlockMatrix method)
switch() (in module hail.expr.functions)
SwitchBuilder (class in hail.expr.builders)
T
T (hail.linalg.BlockMatrix attribute)
Table (class in hail)
take() (hail.expr.expressions.Expression method)
(hail.Table method)
(in module hail.expr.aggregators)
tarray (class in hail.expr.types)
tbool (in module hail.expr.types)
tcall (in module hail.expr.types)
tdict (class in hail.expr.types)
tfloat (in module hail.expr.types)
tfloat32 (in module hail.expr.types)
tfloat64 (in module hail.expr.types)
tint (in module hail.expr.types)
tint32 (in module hail.expr.types)
tint64 (in module hail.expr.types)
tinterval (class in hail.expr.types)
tlocus (class in hail.expr.types)
to_matrix_table() (hail.Table method)
to_numpy() (hail.linalg.BlockMatrix method)
to_pandas() (hail.Table method)
to_spark() (hail.Table method)
tofile() (hail.linalg.BlockMatrix method)
transmission_disequilibrium_test() (in module hail.methods)
transmute() (hail.Table method)
transmute_cols() (hail.MatrixTable method)
transmute_entries() (hail.MatrixTable method)
transmute_globals() (hail.MatrixTable method)
(hail.Table method)
transmute_rows() (hail.MatrixTable method)
triangle() (in module hail.expr.functions)
Trio (class in hail.genetics)
trio_matrix() (in module hail.methods)
trios (hail.genetics.Pedigree attribute)
tset (class in hail.expr.types)
tstr (in module hail.expr.types)
tstruct (class in hail.expr.types)
ttuple (class in hail.expr.types)
tuple() (in module hail.expr.functions)
typecheck() (hail.expr.types.HailType method)
types (hail.expr.types.ttuple attribute)
U
union() (hail.expr.expressions.SetExpression method)
(hail.Table method)
union_cols() (hail.MatrixTable method)
union_rows() (hail.MatrixTable method)
uniroot() (in module hail.expr.functions)
unpersist() (hail.linalg.BlockMatrix method)
(hail.MatrixTable method)
(hail.Table method)
unphased_diploid_gt_index() (hail.expr.expressions.CallExpression method)
(hail.genetics.Call method)
unphased_diploid_gt_index_call() (in module hail.expr.functions)
upper() (hail.expr.expressions.StringExpression method)
V
value_type (hail.expr.types.tdict attribute)
values() (hail.expr.expressions.DictExpression method)
variant_qc() (in module hail.methods)
vep() (in module hail.methods)
W
when() (hail.expr.builders.CaseBuilder method)
(hail.expr.builders.SwitchBuilder method)
when_missing() (hail.expr.builders.SwitchBuilder method)
window_by_locus() (in module hail.methods)
write() (hail.genetics.Pedigree method)
(hail.MatrixTable method)
(hail.Table method)
(hail.genetics.ReferenceGenome method)
(hail.linalg.BlockMatrix method)
write_from_entry_expr() (hail.linalg.BlockMatrix static method)
X
x_contigs (hail.genetics.ReferenceGenome attribute)
Y
y_contigs (hail.genetics.ReferenceGenome attribute)
Z
zip() (in module hail.expr.functions)
zip_with_index() (in module hail.expr.functions)