Class org.broadinstitute.hellbender.tools.IndexFeatureFileIntegrationTest
Tests
| Test |
Duration |
Result |
| testBCFIndex |
0.104s |
passed |
| testBedGZIndex |
0.106s |
passed |
| testBedIndex |
0.098s |
passed |
| testCompressedBCF2_2Index |
0.099s |
passed |
| testEnsemblGtfIndex |
0.322s |
passed |
| testEnsemblGtfIndexQuery[0](Chromosome:3019160-3020500, 1, [Lorg.broadinstitute.hellbender.utils.SimpleInterval;@3625134b, [Ljava.lang.String;@635eae2e, [Ljava.lang.String;@41d0c20c) |
0.005s |
passed |
| testEnsemblGtfIndexQuery[1](Chromosome:3286269-3288786, 4, [Lorg.broadinstitute.hellbender.utils.SimpleInterval;@8843a10, [Ljava.lang.String;@140df1c5, [Ljava.lang.String;@51bfc8ef) |
0.003s |
passed |
| testGVCFIndex |
0.143s |
passed |
| testGVCFTreatedAsVCFIndex |
0.111s |
passed |
| testIndexBCFFileGZ |
0.106s |
passed |
| testIndexNonFeatureFileGZ |
0.110s |
passed |
| testNewGencodeLiftoverGtfFile |
0.121s |
passed |
| testSAMPileupGZIndex |
0.123s |
passed |
| testUncompressedBCF2_2Index |
0.118s |
passed |
| testVCFGZIPIndex |
0.104s |
passed |
| testVCFGZIPIndex_inferredName |
0.107s |
passed |
| testVCFGZIndex_inferredName |
0.105s |
passed |
| testVCFGZIndex_tabix |
0.115s |
passed |
| testVCFGZIndex_tabixRequires_tbi_name |
0.108s |
passed |
| testVCFGZLargeHeaderIndex_tabix |
0.163s |
passed |
| testVCFIndex |
0.138s |
passed |
| testVCFIndex_cannotWrite |
0.104s |
passed |
| testVCFIndex_inferredName |
0.105s |
passed |
| testVCFIndex_missingFile |
0.102s |
passed |
| testVCFWithNoRecords |
0.107s |
passed |
Standard error
[May 19, 2025 at 3:51:06 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[May 19, 2025 at 3:51:06 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[May 19, 2025 at 3:51:07 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[May 19, 2025 at 3:51:07 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[May 19, 2025 at 3:51:07 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[May 19, 2025 at 3:51:07 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[May 19, 2025 at 3:51:07 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[May 19, 2025 at 3:51:07 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[May 19, 2025 at 3:51:07 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[May 19, 2025 at 3:51:08 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[May 19, 2025 at 3:51:08 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[May 19, 2025 at 3:51:08 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[May 19, 2025 at 3:51:08 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[May 19, 2025 at 3:51:08 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[May 19, 2025 at 3:51:08 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[May 19, 2025 at 3:51:08 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[May 19, 2025 at 3:51:08 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[May 19, 2025 at 3:51:09 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[May 19, 2025 at 3:51:09 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[May 19, 2025 at 3:51:09 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[May 19, 2025 at 3:51:09 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[May 19, 2025 at 3:51:09 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[May 19, 2025 at 3:51:09 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712