Class org.broadinstitute.hellbender.tools.copynumber.CollectReadCountsIntegrationTest
Tests
| Test |
Duration |
Result |
| testHDF5Output[0](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/collect-read-counts-NA12878.bam, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/collect-read-counts-NA12878-expected.tsv) |
0.192s |
passed |
| testIntervalExclusionPadding |
0.114s |
passed |
| testIntervalMergingRule |
0.118s |
passed |
| testIntervalPadding |
0.114s |
passed |
| testIntervalSetRule |
0.117s |
passed |
| testTSVOutput[0](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/collect-read-counts-NA12878.bam, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/collect-read-counts-NA12878-expected.tsv) |
0.114s |
passed |
Standard error
[May 19, 2025 at 3:51:21 PM GMT] org.broadinstitute.hellbender.tools.copynumber.CollectReadCounts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[May 19, 2025 at 3:51:21 PM GMT] org.broadinstitute.hellbender.tools.copynumber.CollectReadCounts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[May 19, 2025 at 3:51:21 PM GMT] org.broadinstitute.hellbender.tools.copynumber.CollectReadCounts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[May 19, 2025 at 3:51:21 PM GMT] org.broadinstitute.hellbender.tools.copynumber.CollectReadCounts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[May 19, 2025 at 3:51:21 PM GMT] org.broadinstitute.hellbender.tools.copynumber.CollectReadCounts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[May 19, 2025 at 3:51:22 PM GMT] org.broadinstitute.hellbender.tools.copynumber.CollectReadCounts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712