Class org.broadinstitute.hellbender.tools.copynumber.ModelSegmentsIntegrationTest

all > org.broadinstitute.hellbender.tools.copynumber > ModelSegmentsIntegrationTest
33

tests
0

failures
0

ignored
44.390s

duration
100%

successful

Tests

Test Duration Result
assertThatExpectedOutputUpdateToggleIsDisabled 0s passed
testInvalidDataModesMultipleSamples[0]([/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-with-missing-intervals.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 0.267s passed
testInvalidDataModesMultipleSamples[10]([/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 0.083s passed
testInvalidDataModesMultipleSamples[11]([/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], null) 0.073s passed
testInvalidDataModesMultipleSamples[12]([/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 0.072s passed
testInvalidDataModesMultipleSamples[13]([/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], null) 0.077s passed
testInvalidDataModesMultipleSamples[14]([/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], null, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 0.071s passed
testInvalidDataModesMultipleSamples[1]([/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-with-missing-intervals.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], null) 0.204s passed
testInvalidDataModesMultipleSamples[2]([/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-with-missing-intervals.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], null, null) 0.091s passed
testInvalidDataModesMultipleSamples[3]([/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-with-missing-sites.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 0.287s passed
testInvalidDataModesMultipleSamples[4]([/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-with-missing-sites.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], null) 0.217s passed
testInvalidDataModesMultipleSamples[5](null, [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-with-missing-sites.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], null) 0.215s passed
testInvalidDataModesMultipleSamples[6]([/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-with-missing-sites.allelicCounts.tsv) 0.304s passed
testInvalidDataModesMultipleSamples[7](null, [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-with-missing-sites.allelicCounts.tsv) 0.276s passed
testInvalidDataModesMultipleSamples[8]([/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 0.220s passed
testInvalidDataModesMultipleSamples[9]([/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], null) 0.232s passed
testInvalidDataModesSingleSample[0](/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-with-missing-sites.allelicCounts.tsv) 0.214s passed
testInvalidDataModesSingleSample[1](null, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-with-missing-sites.allelicCounts.tsv) 0.205s passed
testInvalidDataModesSingleSample[2](/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 0.147s passed
testInvalidDataModesSingleSample[3](/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, null) 0.143s passed
testInvalidDataModesSingleSample[4](/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, null, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 0.080s passed
testInvalidDataModesSingleSample[5](null, null, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 0.075s passed
testMetadata 0.305s passed
testValidDataModesMultipleSamples[0](multiple-sample-cr-ac-nac, [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 5.945s passed
testValidDataModesMultipleSamples[1](multiple-sample-cr-ac, [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], null) 5.433s passed
testValidDataModesMultipleSamples[2](multiple-sample-ac-nac, null, [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 4.527s passed
testValidDataModesMultipleSamples[3](multiple-sample-cr, [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], null, null) 1.432s passed
testValidDataModesMultipleSamples[4](multiple-sample-ac, null, [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], null) 5.346s passed
testValidDataModesSingleSample[0](single-sample-cr-ac-nac, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 4.193s passed
testValidDataModesSingleSample[1](single-sample-cr-ac, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, null) 4.283s passed
testValidDataModesSingleSample[2](single-sample-ac-nac, null, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 3.682s passed
testValidDataModesSingleSample[3](single-sample-cr, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, null, null) 1.153s passed
testValidDataModesSingleSample[4](single-sample-ac, null, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, null) 4.538s passed

Standard error

[May 19, 2025 at 3:52:01 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 19, 2025 at 3:52:01 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 19, 2025 at 3:52:02 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 19, 2025 at 3:52:02 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 19, 2025 at 3:52:02 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 19, 2025 at 3:52:02 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 19, 2025 at 3:52:03 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 19, 2025 at 3:52:03 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 19, 2025 at 3:52:03 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=845152256
[May 19, 2025 at 3:52:03 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=845152256
[May 19, 2025 at 3:52:03 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=845152256
[May 19, 2025 at 3:52:03 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=845152256
[May 19, 2025 at 3:52:04 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=845152256
[May 19, 2025 at 3:52:04 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=845152256
[May 19, 2025 at 3:52:04 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=845152256
[May 19, 2025 at 3:52:04 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=845152256
[May 19, 2025 at 3:52:04 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=845152256
[May 19, 2025 at 3:52:04 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=845152256
[May 19, 2025 at 3:52:04 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=845152256
[May 19, 2025 at 3:52:05 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=845152256
[May 19, 2025 at 3:52:05 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=845152256
[May 19, 2025 at 3:52:06 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=845152256
[May 19, 2025 at 3:52:11 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.08 minutes.
Runtime.totalMemory()=845152256
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Runtime.totalMemory()=845152256
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Runtime.totalMemory()=845152256
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Runtime.totalMemory()=845152256
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Runtime.totalMemory()=845152256
[May 19, 2025 at 3:52:21 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=845152256
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Runtime.totalMemory()=845152256
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Runtime.totalMemory()=845152256
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Runtime.totalMemory()=845152256
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Runtime.totalMemory()=845152256
[May 19, 2025 at 3:52:36 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.07 minutes.
Runtime.totalMemory()=845152256
[May 19, 2025 at 3:52:40 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.06 minutes.
Runtime.totalMemory()=845152256
[May 19, 2025 at 3:52:41 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=845152256
[May 19, 2025 at 3:52:45 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.07 minutes.
Runtime.totalMemory()=845152256