Class org.broadinstitute.hellbender.tools.spark.ApplyBQSRSparkIntegrationTest

all > org.broadinstitute.hellbender.tools.spark > ApplyBQSRSparkIntegrationTest
9

tests
0

failures
0

ignored
5.132s

duration
100%

successful

Tests

Test Duration Result
testApplyBQSR[0](ApplyBQSR(args='--quantize-quals -1')) 0.848s passed
testApplyBQSR[1](ApplyBQSR(args='--quantize-quals 6')) 0.681s passed
testApplyBQSR[2](ApplyBQSR(args='null')) 0.620s passed
testApplyBQSR[3](ApplyBQSR(args='-OQ')) 0.622s passed
testApplyBQSR[4](ApplyBQSR(args='--static-quantized-quals 10 --static-quantized-quals 20 --static-quantized-quals 30')) 0.621s passed
testApplyBQSR[5](ApplyBQSR(args='--static-quantized-quals 10 --static-quantized-quals 20 --static-quantized-quals 30 --round-down-quantized')) 0.629s passed
testApplyBQSR[6](ApplyBQSR(args='--disable-sequence-dictionary-validation true')) 0.477s passed
testPRFailWithLowMaxCycle 0.180s passed
testPRNoFailWithHighMaxCycle 0.454s passed

Standard output

--------------------------------------------------------------------------------
[15:58:41] Executing test ApplyBQSRSparkIntegrationTest:testPRFailWithLowMaxCycle
--------------------------------------------------------------------------------
[15:58:41] Executing test ApplyBQSRSparkIntegrationTest:testPRNoFailWithHighMaxCycle

Standard error

[May 19, 2025 at 3:58:37 PM GMT] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=3210739712
[May 19, 2025 at 3:58:38 PM GMT] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=3210739712
[May 19, 2025 at 3:58:39 PM GMT] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=3210739712
[May 19, 2025 at 3:58:39 PM GMT] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=3210739712
[May 19, 2025 at 3:58:40 PM GMT] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=3210739712
[May 19, 2025 at 3:58:40 PM GMT] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=3210739712
[May 19, 2025 at 3:58:41 PM GMT] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=3210739712
[May 19, 2025 at 3:58:41 PM GMT] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3210739712
[May 19, 2025 at 3:58:42 PM GMT] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=3210739712