Class org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectQualityYieldMetricsSparkIntegrationTest

all > org.broadinstitute.hellbender.tools.spark.pipelines.metrics > CollectQualityYieldMetricsSparkIntegrationTest
8

tests
0

failures
0

ignored
1.172s

duration
100%

successful

Tests

Test Duration Result
test[0](valid.bam, valid.CollectQualityYieldMetrics.txt, null, true) 0.192s passed
test[1](valid.cram, valid.CollectQualityYieldMetrics.txt, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/metrics/analysis/CollectQualityYieldMetrics/valid.fasta, true) 0.175s passed
test[2](collect_quality_yield_metrics.sam, collect_quality_yield_metrics.originalquals.txt, null, true) 0.120s passed
test[3](collect_quality_yield_metrics.sam, collect_quality_yield_metrics.quals.txt, null, false) 0.114s passed
test[4](collect_quality_yield_metrics.dictFix.sam, collect_quality_yield_metrics.originalquals.txt, null, true) 0.111s passed
test[5](collect_quality_yield_metrics.dictFix.sam, collect_quality_yield_metrics.quals.txt, null, false) 0.121s passed
test[6](collect_quality_yield_metrics.dictFix.cram, collect_quality_yield_metrics.originalquals.txt, /gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19_chr1_1M.fasta, true) 0.170s passed
test[7](collect_quality_yield_metrics.dictFix.cram, collect_quality_yield_metrics.quals.txt, /gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19_chr1_1M.fasta, false) 0.169s passed

Standard error

16:02:42.614 INFO  BlockManagerInfo - Removed broadcast_3440_piece0 on localhost:42397 in memory (size: 207.9 KiB, free: 1919.4 MiB)
16:02:42.614 INFO  BlockManagerInfo - Removed broadcast_3437_piece0 on localhost:42397 in memory (size: 64.1 KiB, free: 1919.5 MiB)
16:02:42.614 INFO  BlockManagerInfo - Removed broadcast_3449_piece0 on localhost:42397 in memory (size: 64.1 KiB, free: 1919.5 MiB)
16:02:42.615 INFO  BlockManagerInfo - Removed broadcast_3457_piece0 on localhost:42397 in memory (size: 64.0 KiB, free: 1919.6 MiB)
[May 19, 2025 at 4:02:42 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectQualityYieldMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=989855744
[May 19, 2025 at 4:02:42 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectQualityYieldMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=989855744
[May 19, 2025 at 4:02:43 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectQualityYieldMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=989855744
[May 19, 2025 at 4:02:43 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectQualityYieldMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=989855744
[May 19, 2025 at 4:02:43 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectQualityYieldMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=989855744
[May 19, 2025 at 4:02:43 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectQualityYieldMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=989855744
[May 19, 2025 at 4:02:43 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectQualityYieldMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=989855744
[May 19, 2025 at 4:02:43 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectQualityYieldMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=989855744