Class org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounterIntegrationTest
Tests
| Test |
Duration |
Result |
| testASEReadCounterFileFormat |
0.284s |
passed |
| testASEReadCounterImproperPairs |
3.065s |
passed |
| testASEReadCounterMinDepth70 |
0.220s |
passed |
| testASEReadCounterMultipleContexts |
0.158s |
passed |
| testASEReadCounterNonRefAllele |
0.166s |
passed |
| testASEReadCounterWarnings |
0.226s |
passed |
| testASEReadCounterWithCountOverlaps |
0.208s |
passed |
| testASEReadCounterWithCountReads |
0.217s |
passed |
| testASEReadCounterWithHighMQ |
0.218s |
passed |
| testASEReadCounterWithHighMQLowBQ |
0.220s |
passed |
| testASEReadCounterWithLowMQ |
0.215s |
passed |
| testASEReadCounterWithLowMQNoDedup |
0.223s |
passed |
Standard output
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[16:10:08] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
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[16:10:08] Executing test ASEReadCounterIntegrationTest:test improper pairs
--------------------------------------------------------------------------------
[16:10:11] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[16:10:12] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[16:10:12] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[16:10:13] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[16:10:13] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[16:10:13] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[16:10:13] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
Standard error
[May 19, 2025 at 4:10:08 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1841299456
[May 19, 2025 at 4:10:11 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.05 minutes.
Runtime.totalMemory()=1841299456
[May 19, 2025 at 4:10:12 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1841299456
[May 19, 2025 at 4:10:12 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1841299456
[May 19, 2025 at 4:10:12 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1841299456
[May 19, 2025 at 4:10:12 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1841299456
[May 19, 2025 at 4:10:12 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1841299456
[May 19, 2025 at 4:10:13 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1841299456
[May 19, 2025 at 4:10:13 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1841299456
[May 19, 2025 at 4:10:13 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1841299456
[May 19, 2025 at 4:10:13 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1841299456
[May 19, 2025 at 4:10:14 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1841299456