Class org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluationIntegrationTest

all > org.broadinstitute.hellbender.tools.walkers.rnaseq > GeneExpressionEvaluationIntegrationTest
11

tests
0

failures
0

ignored
15.628s

duration
100%

successful

Tests

Test Duration Result
assertThatExpectedOutputUpdateToggleIsDisabled 0s passed
testCompareReadStrands[0](/gatkCloneMountPoint/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam, /gatkCloneMountPoint/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3, exon, false) 8.647s passed
testCompareReadStrands[1](/gatkCloneMountPoint/src/test/resources/large/E_Coli_small_rna.bam, /gatkCloneMountPoint/src/test/resources/large/E_Coli.gff3, CDS, true) 2.099s passed
testConsistentWithPast[0](/gatkCloneMountPoint/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam, /gatkCloneMountPoint/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3, PROPORTIONAL, IGNORE, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.proportional.map.ignore.tsv, exon, false) 0.874s passed
testConsistentWithPast[1](/gatkCloneMountPoint/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam, /gatkCloneMountPoint/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3, EQUAL, IGNORE, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.equal.map.ignore.tsv, exon, false) 0.912s passed
testConsistentWithPast[2](/gatkCloneMountPoint/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam, /gatkCloneMountPoint/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3, PROPORTIONAL, EQUAL, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.proportional.map.equal.tsv, exon, false) 0.917s passed
testConsistentWithPast[3](/gatkCloneMountPoint/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam, /gatkCloneMountPoint/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3, EQUAL, EQUAL, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.equal.map.equal.tsv, exon, false) 1.033s passed
testConsistentWithPast[4](/gatkCloneMountPoint/src/test/resources/large/E_Coli_small_rna.bam, /gatkCloneMountPoint/src/test/resources/large/E_Coli.gff3, PROPORTIONAL, IGNORE, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.proportional.map.ignore.tsv, CDS, true) 0.345s passed
testConsistentWithPast[5](/gatkCloneMountPoint/src/test/resources/large/E_Coli_small_rna.bam, /gatkCloneMountPoint/src/test/resources/large/E_Coli.gff3, EQUAL, IGNORE, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.equal.map.ignore.tsv, CDS, true) 0.297s passed
testConsistentWithPast[6](/gatkCloneMountPoint/src/test/resources/large/E_Coli_small_rna.bam, /gatkCloneMountPoint/src/test/resources/large/E_Coli.gff3, PROPORTIONAL, EQUAL, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.proportional.map.equal.tsv, CDS, true) 0.269s passed
testConsistentWithPast[7](/gatkCloneMountPoint/src/test/resources/large/E_Coli_small_rna.bam, /gatkCloneMountPoint/src/test/resources/large/E_Coli.gff3, EQUAL, EQUAL, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.equal.map.equal.tsv, CDS, true) 0.235s passed

Standard error

[May 19, 2025 at 4:10:15 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=1841299456
[May 19, 2025 at 4:10:16 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=1841299456
[May 19, 2025 at 4:10:17 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=2373976064
[May 19, 2025 at 4:10:18 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=2675965952
[May 19, 2025 at 4:10:19 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=2969567232
[May 19, 2025 at 4:10:20 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=3196059648
[May 19, 2025 at 4:10:21 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=3384803328
[May 19, 2025 at 4:10:22 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2378170368
[May 19, 2025 at 4:10:22 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2378170368
[May 19, 2025 at 4:10:23 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2378170368
[May 19, 2025 at 4:10:23 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2378170368
[May 19, 2025 at 4:10:23 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2378170368
[May 19, 2025 at 4:10:24 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2378170368
[May 19, 2025 at 4:10:24 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2378170368
[May 19, 2025 at 4:10:24 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2378170368
[May 19, 2025 at 4:10:24 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2378170368
[May 19, 2025 at 4:10:25 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2378170368
[May 19, 2025 at 4:10:26 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2896166912
[May 19, 2025 at 4:10:27 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2896166912
[May 19, 2025 at 4:10:28 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2896166912
[May 19, 2025 at 4:10:28 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3091202048
[May 19, 2025 at 4:10:29 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3091202048
[May 19, 2025 at 4:10:29 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3091202048
[May 19, 2025 at 4:10:29 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3091202048