Class org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReadsIntegrationTest
Tests
| Test |
Duration |
Result |
| testLargeFileThatForcesSnappyUsage |
11.847s |
passed |
| testSplitsFixNDN |
0.133s |
passed |
| testSplitsOfUnpairedAndUnmappedReads |
1.626s |
passed |
| testSplitsTargetRegionFunctionality |
0.256s |
passed |
| testSplitsWithOverhangs |
0.487s |
passed |
| testSplitsWithOverhangs0Mismatches |
0.358s |
passed |
| testSplitsWithOverhangs5BasesInOverhang |
0.417s |
passed |
| testSplitsWithOverhangsNotClipping |
0.381s |
passed |
| testSplitsWithoutSecondaryAlignments |
0.409s |
passed |
Standard output
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[16:10:41] Executing test SplitNCigarReadsIntegrationTest:test fix NDN
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[16:10:41] Executing test SplitNCigarReadsIntegrationTest:regression test for unmapped and unpaired reads
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[16:10:43] Executing test SplitNCigarReadsIntegrationTest:regression test for unmapped and unpaired reads
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[16:10:43] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs
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[16:10:43] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs 0 mismatches
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[16:10:44] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs 5 bases in overhang
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[16:10:44] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs not clipping
--------------------------------------------------------------------------------
[16:10:45] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs
Standard error
[May 19, 2025 at 4:10:41 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.20 minutes.
Runtime.totalMemory()=524288000
[May 19, 2025 at 4:10:41 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 19, 2025 at 4:10:43 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[May 19, 2025 at 4:10:43 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 19, 2025 at 4:10:43 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 19, 2025 at 4:10:44 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=973078528
[May 19, 2025 at 4:10:44 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=727711744
[May 19, 2025 at 4:10:45 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=601882624
[May 19, 2025 at 4:10:45 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=601882624