Class org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSRIntegrationTest
Tests
| Test |
Duration |
Result |
| testApplyIndelRecalibration |
0.699s |
passed |
| testApplySNPRecalibration |
1.821s |
passed |
| testApplyVQSRAlleleSpecificINDELmode |
0.102s |
passed |
| testApplyVQSRAlleleSpecificINDELmodeGZIPIndex |
0.144s |
passed |
| testApplyVQSRAlleleSpecificSNPmode |
0.105s |
passed |
| testApplyVQSRSnpAndIndelTogether |
0.091s |
passed |
| testApplyVQSRSnpAndIndelTogetherExcludeFiltered |
0.091s |
passed |
Standard output
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[16:12:53] Executing test ApplyVQSRIntegrationTest:testApplyVQSRIndel
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[16:12:54] Executing test ApplyVQSRIntegrationTest:testApplyVQSRSNP
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[16:12:56] Executing test ApplyVQSRIntegrationTest:testApplyVQSRAlleleSpecificINDELmode
--------------------------------------------------------------------------------
[16:12:56] Executing test ApplyVQSRIntegrationTest:testApplyVQSRAlleleSpecificINDELmodeGZIP
--------------------------------------------------------------------------------
[16:12:56] Executing test ApplyVQSRIntegrationTest:testApplyVQSRAlleleSpecificSNPmode
--------------------------------------------------------------------------------
[16:12:56] Executing test ApplyVQSRIntegrationTest:testApplyVQSRSnpAndIndelTogether
Standard error
[May 19, 2025 at 4:12:54 PM GMT] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1048576000
[May 19, 2025 at 4:12:56 PM GMT] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.03 minutes.
Runtime.totalMemory()=1048576000
[May 19, 2025 at 4:12:56 PM GMT] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 19, 2025 at 4:12:56 PM GMT] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 19, 2025 at 4:12:56 PM GMT] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 19, 2025 at 4:12:56 PM GMT] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 19, 2025 at 4:12:56 PM GMT] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000