Class org.broadinstitute.hellbender.tools.funcotator.FuncotateSegmentsIntegrationTest
|
100%
successful |
Tests
| Test | Duration | Result |
|---|---|---|
| testEmptyGatkCalledSegmentFile | 0.164s | passed |
| testGatkCalledSegmentFile | 1.391s | passed |
| testHg38CalledCopyRatioSegmentsGatkFile | 3.290s | passed |
| testModelSegmentsGatkFile | 8.441s | passed |
| testSimpleMultipleGenesOverlap[0]([3:2000000-2500000, 3:3000000-3500000, 3:3500001-3900000], [CNTN4,CNTN4-AS2, CNTN4,CNTN4-AS1, ], [, CNTN4, ], [CNTN4, , ], [, , ], [, , ], [0, -, +], [0.037099, 0.001748, 0.501748], [2000, 3000, 4000], [SAMPLE1, SAMPLE1, SAMPLE1]) | 0.104s | passed |
| testSimpleNoOverlap | 0.103s | passed |
Standard error
[May 19, 2025 at 3:39:49 PM UTC] org.broadinstitute.hellbender.tools.funcotator.FuncotateSegments done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=2086666240 [May 19, 2025 at 3:39:50 PM UTC] org.broadinstitute.hellbender.tools.funcotator.FuncotateSegments done. Elapsed time: 0.02 minutes. Runtime.totalMemory()=2086666240 [May 19, 2025 at 3:39:53 PM UTC] org.broadinstitute.hellbender.tools.funcotator.FuncotateSegments done. Elapsed time: 0.05 minutes. Runtime.totalMemory()=2403336192 [May 19, 2025 at 3:40:02 PM UTC] org.broadinstitute.hellbender.tools.funcotator.FuncotateSegments done. Elapsed time: 0.14 minutes. Runtime.totalMemory()=2403336192 [May 19, 2025 at 3:40:02 PM UTC] org.broadinstitute.hellbender.tools.funcotator.FuncotateSegments done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=2403336192 [May 19, 2025 at 3:40:02 PM UTC] org.broadinstitute.hellbender.tools.funcotator.FuncotateSegments done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=2403336192