Class org.broadinstitute.hellbender.tools.spark.pipelines.CountReadsSparkIntegrationTest

all > org.broadinstitute.hellbender.tools.spark.pipelines > CountReadsSparkIntegrationTest
19

tests
0

failures
0

ignored
3.486s

duration
100%

successful

Tests

Test Duration Result
test 0.263s passed
testCountReadsWithIntervals[0](, 8) 0.175s passed
testCountReadsWithIntervals[10](-L chr7:1-10 -L chr7:5-10 --interval-padding 10 --interval-set-rule INTERSECTION -XL chr7:21-200, 4) 0.177s passed
testCountReadsWithIntervals[1](-L chr7:1-20, 4) 0.179s passed
testCountReadsWithIntervals[2](-L chr1, 0) 0.177s passed
testCountReadsWithIntervals[3](-L chr1 -L chr7, 7) 0.173s passed
testCountReadsWithIntervals[4](-XL chr7, 0) 0.178s passed
testCountReadsWithIntervals[5](-XL chr7:2-404, 3) 0.180s passed
testCountReadsWithIntervals[6](-L chr7:1-30 -L chr7:10-15 --interval-set-rule INTERSECTION, 3) 0.190s passed
testCountReadsWithIntervals[7](-L chr7:1 --interval-padding 19, 4) 0.174s passed
testCountReadsWithIntervals[8](-L src/test/resources/org/broadinstitute/hellbender/tools/chr7_1_20_interval.list, 4) 0.170s passed
testCountReadsWithIntervals[9](-L chr7:1-100 -XL chr7:2-100, 3) 0.176s passed
testCountReads[0](count_reads.sam, null, 8) 0.101s passed
testCountReads[1](count_reads.bam, null, 8) 0.266s passed
testCountReads[2](count_reads.cram, count_reads.fasta, 8) 0.208s passed
testCountReads[3](count_reads_sorted.sam, null, 8) 0.106s passed
testCountReads[4](count_reads_sorted.bam, null, 8) 0.186s passed
testCountReads[5](count_reads_sorted.cram, count_reads.fasta, 8) 0.150s passed
testNoNPRWhenOutputIsUnspecified 0.257s passed

Standard output

8
8
8
8
8
8
8
8
4
0
7
0
3
3
4
4
3
4
8

Standard error

[May 19, 2025 at 3:44:26 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountReadsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2032140288
[May 19, 2025 at 3:44:27 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountReadsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2032140288
[May 19, 2025 at 3:44:27 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountReadsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2032140288
[May 19, 2025 at 3:44:27 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountReadsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2032140288
[May 19, 2025 at 3:44:27 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountReadsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2032140288
[May 19, 2025 at 3:44:27 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountReadsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2032140288
[May 19, 2025 at 3:44:27 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountReadsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2032140288
[May 19, 2025 at 3:44:28 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountReadsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2032140288
[May 19, 2025 at 3:44:28 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountReadsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2032140288
[May 19, 2025 at 3:44:28 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountReadsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2032140288
[May 19, 2025 at 3:44:28 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountReadsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2032140288
[May 19, 2025 at 3:44:28 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountReadsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2032140288
[May 19, 2025 at 3:44:29 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountReadsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2032140288
[May 19, 2025 at 3:44:29 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountReadsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2032140288
[May 19, 2025 at 3:44:29 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountReadsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2032140288
[May 19, 2025 at 3:44:29 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountReadsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2032140288
[May 19, 2025 at 3:44:29 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountReadsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2032140288
[May 19, 2025 at 3:44:29 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountReadsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2032140288
[May 19, 2025 at 3:44:30 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountReadsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2032140288