Class org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSparkIntegrationTest

all > org.broadinstitute.hellbender.tools.spark.pipelines > CountVariantsSparkIntegrationTest
16

tests
0

failures
0

ignored
5.184s

duration
100%

successful

Tests

Test Duration Result
testCountVariantsWithIntervals[0](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf, , 9594) 0.216s passed
testCountVariantsWithIntervals[10](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -L 20 -L 21, 9594) 0.225s passed
testCountVariantsWithIntervals[11](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -XL 20, 3937) 0.224s passed
testCountVariantsWithIntervals[1](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -L 20, 5657) 0.242s passed
testCountVariantsWithIntervals[2](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -L 20:10200000-11000000, 933) 0.219s passed
testCountVariantsWithIntervals[3](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -L 21, 3937) 0.224s passed
testCountVariantsWithIntervals[4](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -L 20 -L 21, 9594) 0.226s passed
testCountVariantsWithIntervals[5](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -XL 20, 3937) 0.219s passed
testCountVariantsWithIntervals[6](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, , 9594) 0.224s passed
testCountVariantsWithIntervals[7](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -L 20, 5657) 0.229s passed
testCountVariantsWithIntervals[8](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -L 20:10200000-11000000, 933) 0.224s passed
testCountVariantsWithIntervals[9](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -L 21, 3937) 0.238s passed
testNoNPRWhenOutputIsUnspecified 0.083s passed
test[0](src/test/resources/org/broadinstitute/hellbender/tools/count_variants.vcf, 26) 0.089s passed
test[1](src/test/resources/org/broadinstitute/hellbender/tools/count_variants.blockgz.gz, 26) 0.088s passed
test[2](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.1.1-65M.vcf, 1375319) 2.214s passed

Standard output

26
26
1375319
9594
9594
5657
5657
933
933
3937
3937
9594
9594
3937
3937
9594
9594
5657
5657
933
933
3937
3937
9594
9594
3937
3937
26

Standard error

[May 19, 2025 at 3:44:30 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2032140288
[May 19, 2025 at 3:44:30 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2032140288
[May 19, 2025 at 3:44:32 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.04 minutes.
Runtime.totalMemory()=2032140288
[May 19, 2025 at 3:44:32 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2032140288
[May 19, 2025 at 3:44:32 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2032140288
[May 19, 2025 at 3:44:33 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2032140288
[May 19, 2025 at 3:44:33 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2032140288
[May 19, 2025 at 3:44:33 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2032140288
[May 19, 2025 at 3:44:33 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2032140288
[May 19, 2025 at 3:44:34 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2032140288
[May 19, 2025 at 3:44:34 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2032140288
[May 19, 2025 at 3:44:34 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2032140288
[May 19, 2025 at 3:44:34 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2032140288
[May 19, 2025 at 3:44:34 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2032140288
[May 19, 2025 at 3:44:35 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2032140288
[May 19, 2025 at 3:44:35 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2032140288