Class org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounterIntegrationTest
Tests
| Test |
Duration |
Result |
| testASEReadCounterFileFormat |
0.278s |
passed |
| testASEReadCounterImproperPairs |
3.184s |
passed |
| testASEReadCounterMinDepth70 |
0.196s |
passed |
| testASEReadCounterMultipleContexts |
0.125s |
passed |
| testASEReadCounterNonRefAllele |
0.125s |
passed |
| testASEReadCounterWarnings |
0.191s |
passed |
| testASEReadCounterWithCountOverlaps |
0.192s |
passed |
| testASEReadCounterWithCountReads |
0.194s |
passed |
| testASEReadCounterWithHighMQ |
0.195s |
passed |
| testASEReadCounterWithHighMQLowBQ |
0.192s |
passed |
| testASEReadCounterWithLowMQ |
0.195s |
passed |
| testASEReadCounterWithLowMQNoDedup |
0.197s |
passed |
Standard output
--------------------------------------------------------------------------------
[15:52:37] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[15:52:37] Executing test ASEReadCounterIntegrationTest:test improper pairs
--------------------------------------------------------------------------------
[15:52:41] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[15:52:41] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[15:52:41] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[15:52:42] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[15:52:42] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[15:52:42] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[15:52:42] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
Standard error
[May 19, 2025 at 3:52:37 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1912602624
[May 19, 2025 at 3:52:41 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.05 minutes.
Runtime.totalMemory()=1912602624
[May 19, 2025 at 3:52:41 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1912602624
[May 19, 2025 at 3:52:41 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1912602624
[May 19, 2025 at 3:52:41 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1912602624
[May 19, 2025 at 3:52:41 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1912602624
[May 19, 2025 at 3:52:41 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1912602624
[May 19, 2025 at 3:52:42 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1912602624
[May 19, 2025 at 3:52:42 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1912602624
[May 19, 2025 at 3:52:42 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1912602624
[May 19, 2025 at 3:52:42 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1912602624
[May 19, 2025 at 3:52:42 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1912602624