Class org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSRIntegrationTest
Tests
| Test |
Duration |
Result |
| testApplyIndelRecalibration |
0.784s |
passed |
| testApplySNPRecalibration |
1.842s |
passed |
| testApplyVQSRAlleleSpecificINDELmode |
0.085s |
passed |
| testApplyVQSRAlleleSpecificINDELmodeGZIPIndex |
0.146s |
passed |
| testApplyVQSRAlleleSpecificSNPmode |
0.099s |
passed |
| testApplyVQSRSnpAndIndelTogether |
0.074s |
passed |
| testApplyVQSRSnpAndIndelTogetherExcludeFiltered |
0.072s |
passed |
Standard output
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[15:55:29] Executing test ApplyVQSRIntegrationTest:testApplyVQSRIndel
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[15:55:30] Executing test ApplyVQSRIntegrationTest:testApplyVQSRSNP
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[15:55:32] Executing test ApplyVQSRIntegrationTest:testApplyVQSRAlleleSpecificINDELmode
--------------------------------------------------------------------------------
[15:55:32] Executing test ApplyVQSRIntegrationTest:testApplyVQSRAlleleSpecificINDELmodeGZIP
--------------------------------------------------------------------------------
[15:55:32] Executing test ApplyVQSRIntegrationTest:testApplyVQSRAlleleSpecificSNPmode
--------------------------------------------------------------------------------
[15:55:32] Executing test ApplyVQSRIntegrationTest:testApplyVQSRSnpAndIndelTogether
Standard error
[May 19, 2025 at 3:55:30 PM UTC] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1308622848
[May 19, 2025 at 3:55:32 PM UTC] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.03 minutes.
Runtime.totalMemory()=1308622848
[May 19, 2025 at 3:55:32 PM UTC] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1308622848
[May 19, 2025 at 3:55:32 PM UTC] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1308622848
[May 19, 2025 at 3:55:32 PM UTC] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1308622848
[May 19, 2025 at 3:55:32 PM UTC] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1308622848
[May 19, 2025 at 3:55:32 PM UTC] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1308622848