Class org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest

all > org.broadinstitute.hellbender.engine > MultiVariantWalkerIntegrationTest
tests
failures
ignored
0.306s
duration
100%
successful
Tests
Standard error
Tests

Test	Duration	Result
testDuplicateSources	0.019s	passed
testGetCompatibleHeader	0.025s	passed
testGetConflictingHeader	0.021s	passed
testIteratorOverlapping	0.022s	passed
testNoDictionaryForAllInputs	0.022s	passed
testNoDictionaryForOneInput	0.024s	passed
testNoDictionaryForOnlyInput	0.018s	passed
testVariantOrder[0]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf], null, 26)	0.018s	passed
testVariantOrder[1]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf], null, 13)	0.018s	passed
testVariantOrder[2]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf], null, 26)	0.019s	passed
testVariantOrder[3]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_1.vcf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_2.vcf], null, 26)	0.021s	passed
testVariantOrder[4]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf], 1, 14)	0.020s	passed
testVariantOrder[5]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf], 1, 7)	0.018s	passed
testVariantOrder[6]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf], 1, 14)	0.021s	passed
testVariantOrder[7]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf], 2:200-600, 3)	0.020s	passed
testVariantsFromBundleOrder	-	ignored
Standard error

13:51:14.341 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:51:14.341 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g5c95f6f-SNAPSHOT
13:51:14.341 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
13:51:14.341 INFO  TestMultiVariantWalker - Executing as root@9cd1444b9593 on Linux v6.11.0-1014-azure amd64
13:51:14.341 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
13:51:14.341 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 1:51:14 PM GMT
13:51:14.341 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:51:14.341 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:51:14.342 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
13:51:14.342 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
13:51:14.342 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
13:51:14.342 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
13:51:14.342 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
13:51:14.342 INFO  TestMultiVariantWalker - Inflater: IntelInflater
13:51:14.342 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
13:51:14.342 INFO  TestMultiVariantWalker - Requester pays: disabled
13:51:14.342 INFO  TestMultiVariantWalker - Initializing engine
13:51:14.344 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
13:51:14.345 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 1:51:14 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1918894080
13:51:14.360 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:51:14.360 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g5c95f6f-SNAPSHOT
13:51:14.360 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
13:51:14.360 INFO  TestMultiVariantWalker - Executing as root@9cd1444b9593 on Linux v6.11.0-1014-azure amd64
13:51:14.360 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
13:51:14.360 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 1:51:14 PM GMT
13:51:14.361 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:51:14.361 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:51:14.361 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
13:51:14.361 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
13:51:14.361 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
13:51:14.361 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
13:51:14.361 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
13:51:14.361 INFO  TestMultiVariantWalker - Inflater: IntelInflater
13:51:14.361 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
13:51:14.361 INFO  TestMultiVariantWalker - Requester pays: disabled
13:51:14.361 INFO  TestMultiVariantWalker - Initializing engine
13:51:14.362 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
13:51:14.364 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
13:51:14.367 INFO  TestMultiVariantWalker - Done initializing engine
13:51:14.368 INFO  ProgressMeter - Starting traversal
13:51:14.368 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
13:51:14.370 INFO  ProgressMeter -             unmapped              0.0                    26         780000.0
13:51:14.370 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
13:51:14.371 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 1:51:14 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1918894080
13:51:14.388 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:51:14.388 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g5c95f6f-SNAPSHOT
13:51:14.388 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
13:51:14.388 INFO  TestMultiVariantWalker - Executing as root@9cd1444b9593 on Linux v6.11.0-1014-azure amd64
13:51:14.389 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
13:51:14.389 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 1:51:14 PM GMT
13:51:14.389 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:51:14.389 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:51:14.389 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
13:51:14.389 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
13:51:14.389 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
13:51:14.389 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
13:51:14.389 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
13:51:14.389 INFO  TestMultiVariantWalker - Inflater: IntelInflater
13:51:14.389 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
13:51:14.389 INFO  TestMultiVariantWalker - Requester pays: disabled
13:51:14.389 INFO  TestMultiVariantWalker - Initializing engine
13:51:14.390 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
13:51:14.391 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariantsConflictingDictionary.vcf
13:51:14.392 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 1:51:14 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1918894080
13:51:14.407 INFO  TestMultiVariantWalkerIterator - ------------------------------------------------------------
13:51:14.407 INFO  TestMultiVariantWalkerIterator - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g5c95f6f-SNAPSHOT
13:51:14.407 INFO  TestMultiVariantWalkerIterator - For support and documentation go to https://software.broadinstitute.org/gatk/
13:51:14.408 INFO  TestMultiVariantWalkerIterator - Executing as root@9cd1444b9593 on Linux v6.11.0-1014-azure amd64
13:51:14.408 INFO  TestMultiVariantWalkerIterator - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
13:51:14.408 INFO  TestMultiVariantWalkerIterator - Start Date/Time: May 27, 2025 at 1:51:14 PM GMT
13:51:14.408 INFO  TestMultiVariantWalkerIterator - ------------------------------------------------------------
13:51:14.408 INFO  TestMultiVariantWalkerIterator - ------------------------------------------------------------
13:51:14.408 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.COMPRESSION_LEVEL : 2
13:51:14.408 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
13:51:14.408 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
13:51:14.408 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
13:51:14.408 INFO  TestMultiVariantWalkerIterator - Deflater: IntelDeflater
13:51:14.408 INFO  TestMultiVariantWalkerIterator - Inflater: IntelInflater
13:51:14.408 INFO  TestMultiVariantWalkerIterator - GCS max retries/reopens: 20
13:51:14.408 INFO  TestMultiVariantWalkerIterator - Requester pays: disabled
13:51:14.408 INFO  TestMultiVariantWalkerIterator - Initializing engine
13:51:14.409 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_WithOverlap.vcf
13:51:14.411 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_WithOverlap.vcf
13:51:14.413 INFO  TestMultiVariantWalkerIterator - Done initializing engine
13:51:14.413 INFO  ProgressMeter - Starting traversal
13:51:14.414 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
13:51:14.415 INFO  ProgressMeter -             unmapped              0.0                    28        1680000.0
13:51:14.415 INFO  ProgressMeter - Traversal complete. Processed 28 total variants in 0.0 minutes.
13:51:14.415 INFO  TestMultiVariantWalkerIterator - Shutting down engine
[May 27, 2025 at 1:51:14 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalkerIterator done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1918894080
13:51:14.431 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:51:14.431 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g5c95f6f-SNAPSHOT
13:51:14.431 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
13:51:14.431 INFO  TestMultiVariantWalker - Executing as root@9cd1444b9593 on Linux v6.11.0-1014-azure amd64
13:51:14.431 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
13:51:14.431 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 1:51:14 PM GMT
13:51:14.431 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:51:14.431 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:51:14.431 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
13:51:14.431 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
13:51:14.431 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
13:51:14.431 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
13:51:14.431 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
13:51:14.431 INFO  TestMultiVariantWalker - Inflater: IntelInflater
13:51:14.432 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
13:51:14.432 INFO  TestMultiVariantWalker - Requester pays: disabled
13:51:14.432 INFO  TestMultiVariantWalker - Initializing engine
13:51:14.433 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf
13:51:14.434 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf
13:51:14.436 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf. The input may not exist or may not have a valid header
13:51:14.436 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf. The input may not exist or may not have a valid header
13:51:14.436 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 1:51:14 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1918894080
13:51:14.455 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:51:14.455 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g5c95f6f-SNAPSHOT
13:51:14.455 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
13:51:14.455 INFO  TestMultiVariantWalker - Executing as root@9cd1444b9593 on Linux v6.11.0-1014-azure amd64
13:51:14.455 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
13:51:14.456 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 1:51:14 PM GMT
13:51:14.456 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:51:14.456 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:51:14.456 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
13:51:14.456 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
13:51:14.456 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
13:51:14.456 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
13:51:14.456 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
13:51:14.456 INFO  TestMultiVariantWalker - Inflater: IntelInflater
13:51:14.456 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
13:51:14.456 INFO  TestMultiVariantWalker - Requester pays: disabled
13:51:14.456 INFO  TestMultiVariantWalker - Initializing engine
13:51:14.457 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
13:51:14.458 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf
13:51:14.459 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf. The input may not exist or may not have a valid header
13:51:14.460 INFO  TestMultiVariantWalker - Done initializing engine
13:51:14.460 INFO  ProgressMeter - Starting traversal
13:51:14.460 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
13:51:14.461 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
13:51:14.461 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
13:51:14.461 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 1:51:14 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1918894080
13:51:14.476 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:51:14.476 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g5c95f6f-SNAPSHOT
13:51:14.476 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
13:51:14.476 INFO  TestMultiVariantWalker - Executing as root@9cd1444b9593 on Linux v6.11.0-1014-azure amd64
13:51:14.476 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
13:51:14.476 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 1:51:14 PM GMT
13:51:14.476 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:51:14.476 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:51:14.476 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
13:51:14.476 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
13:51:14.476 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
13:51:14.476 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
13:51:14.477 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
13:51:14.477 INFO  TestMultiVariantWalker - Inflater: IntelInflater
13:51:14.477 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
13:51:14.477 INFO  TestMultiVariantWalker - Requester pays: disabled
13:51:14.477 INFO  TestMultiVariantWalker - Initializing engine
13:51:14.478 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf
13:51:14.479 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf. The input may not exist or may not have a valid header
13:51:14.479 INFO  TestMultiVariantWalker - Done initializing engine
13:51:14.479 INFO  ProgressMeter - Starting traversal
13:51:14.479 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
13:51:14.479 INFO  ProgressMeter -             unmapped              0.0                    13         Infinity
13:51:14.479 INFO  ProgressMeter - Traversal complete. Processed 13 total variants in 0.0 minutes.
13:51:14.480 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 1:51:14 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1918894080
13:51:14.495 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:51:14.495 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g5c95f6f-SNAPSHOT
13:51:14.496 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
13:51:14.496 INFO  TestMultiVariantWalker - Executing as root@9cd1444b9593 on Linux v6.11.0-1014-azure amd64
13:51:14.496 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
13:51:14.496 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 1:51:14 PM GMT
13:51:14.496 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:51:14.496 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:51:14.496 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
13:51:14.496 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
13:51:14.496 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
13:51:14.496 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
13:51:14.496 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
13:51:14.496 INFO  TestMultiVariantWalker - Inflater: IntelInflater
13:51:14.496 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
13:51:14.496 INFO  TestMultiVariantWalker - Requester pays: disabled
13:51:14.496 INFO  TestMultiVariantWalker - Initializing engine
13:51:14.497 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
13:51:14.498 INFO  TestMultiVariantWalker - Done initializing engine
13:51:14.498 INFO  ProgressMeter - Starting traversal
13:51:14.498 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
13:51:14.498 INFO  ProgressMeter -             unmapped              0.0                    26         Infinity
13:51:14.498 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
13:51:14.499 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 1:51:14 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1918894080
13:51:14.513 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:51:14.513 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g5c95f6f-SNAPSHOT
13:51:14.513 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
13:51:14.513 INFO  TestMultiVariantWalker - Executing as root@9cd1444b9593 on Linux v6.11.0-1014-azure amd64
13:51:14.513 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
13:51:14.513 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 1:51:14 PM GMT
13:51:14.513 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:51:14.513 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:51:14.513 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
13:51:14.513 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
13:51:14.513 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
13:51:14.513 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
13:51:14.514 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
13:51:14.514 INFO  TestMultiVariantWalker - Inflater: IntelInflater
13:51:14.514 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
13:51:14.514 INFO  TestMultiVariantWalker - Requester pays: disabled
13:51:14.514 INFO  TestMultiVariantWalker - Initializing engine
13:51:14.515 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
13:51:14.516 INFO  TestMultiVariantWalker - Done initializing engine
13:51:14.516 INFO  ProgressMeter - Starting traversal
13:51:14.516 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
13:51:14.517 INFO  ProgressMeter -             unmapped              0.0                    13         Infinity
13:51:14.517 INFO  ProgressMeter - Traversal complete. Processed 13 total variants in 0.0 minutes.
13:51:14.517 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 1:51:14 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1918894080
13:51:14.531 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:51:14.531 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g5c95f6f-SNAPSHOT
13:51:14.531 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
13:51:14.531 INFO  TestMultiVariantWalker - Executing as root@9cd1444b9593 on Linux v6.11.0-1014-azure amd64
13:51:14.531 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
13:51:14.531 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 1:51:14 PM GMT
13:51:14.531 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:51:14.531 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:51:14.531 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
13:51:14.531 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
13:51:14.531 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
13:51:14.531 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
13:51:14.531 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
13:51:14.531 INFO  TestMultiVariantWalker - Inflater: IntelInflater
13:51:14.531 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
13:51:14.531 INFO  TestMultiVariantWalker - Requester pays: disabled
13:51:14.532 INFO  TestMultiVariantWalker - Initializing engine
13:51:14.532 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
13:51:14.533 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
13:51:14.535 INFO  TestMultiVariantWalker - Done initializing engine
13:51:14.535 INFO  ProgressMeter - Starting traversal
13:51:14.535 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
13:51:14.536 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
13:51:14.536 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
13:51:14.536 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 1:51:14 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1918894080
13:51:14.550 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:51:14.550 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g5c95f6f-SNAPSHOT
13:51:14.550 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
13:51:14.550 INFO  TestMultiVariantWalker - Executing as root@9cd1444b9593 on Linux v6.11.0-1014-azure amd64
13:51:14.550 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
13:51:14.551 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 1:51:14 PM GMT
13:51:14.551 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:51:14.551 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:51:14.551 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
13:51:14.551 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
13:51:14.551 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
13:51:14.551 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
13:51:14.551 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
13:51:14.551 INFO  TestMultiVariantWalker - Inflater: IntelInflater
13:51:14.551 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
13:51:14.551 INFO  TestMultiVariantWalker - Requester pays: disabled
13:51:14.551 INFO  TestMultiVariantWalker - Initializing engine
13:51:14.552 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_1.vcf
13:51:14.554 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_2.vcf
13:51:14.555 INFO  TestMultiVariantWalker - Done initializing engine
13:51:14.555 INFO  ProgressMeter - Starting traversal
13:51:14.555 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
13:51:14.556 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
13:51:14.556 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
13:51:14.557 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 1:51:14 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1918894080
13:51:14.572 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:51:14.572 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g5c95f6f-SNAPSHOT
13:51:14.572 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
13:51:14.572 INFO  TestMultiVariantWalker - Executing as root@9cd1444b9593 on Linux v6.11.0-1014-azure amd64
13:51:14.572 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
13:51:14.572 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 1:51:14 PM GMT
13:51:14.572 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:51:14.572 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:51:14.572 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
13:51:14.572 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
13:51:14.572 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
13:51:14.572 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
13:51:14.572 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
13:51:14.572 INFO  TestMultiVariantWalker - Inflater: IntelInflater
13:51:14.572 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
13:51:14.573 INFO  TestMultiVariantWalker - Requester pays: disabled
13:51:14.573 INFO  TestMultiVariantWalker - Initializing engine
13:51:14.574 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
13:51:14.575 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
13:51:14.575 INFO  TestMultiVariantWalker - Done initializing engine
13:51:14.575 INFO  ProgressMeter - Starting traversal
13:51:14.575 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
13:51:14.576 INFO  ProgressMeter -             unmapped              0.0                    14         840000.0
13:51:14.576 INFO  ProgressMeter - Traversal complete. Processed 14 total variants in 0.0 minutes.
13:51:14.576 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 1:51:14 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1918894080
13:51:14.592 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:51:14.592 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g5c95f6f-SNAPSHOT
13:51:14.592 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
13:51:14.592 INFO  TestMultiVariantWalker - Executing as root@9cd1444b9593 on Linux v6.11.0-1014-azure amd64
13:51:14.592 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
13:51:14.592 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 1:51:14 PM GMT
13:51:14.592 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:51:14.592 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:51:14.592 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
13:51:14.592 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
13:51:14.592 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
13:51:14.592 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
13:51:14.592 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
13:51:14.592 INFO  TestMultiVariantWalker - Inflater: IntelInflater
13:51:14.592 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
13:51:14.592 INFO  TestMultiVariantWalker - Requester pays: disabled
13:51:14.592 INFO  TestMultiVariantWalker - Initializing engine
13:51:14.594 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
13:51:14.595 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
13:51:14.595 INFO  TestMultiVariantWalker - Done initializing engine
13:51:14.595 INFO  ProgressMeter - Starting traversal
13:51:14.595 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
13:51:14.595 INFO  ProgressMeter -             unmapped              0.0                     7         Infinity
13:51:14.595 INFO  ProgressMeter - Traversal complete. Processed 7 total variants in 0.0 minutes.
13:51:14.595 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 1:51:14 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1918894080
13:51:14.610 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:51:14.610 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g5c95f6f-SNAPSHOT
13:51:14.610 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
13:51:14.610 INFO  TestMultiVariantWalker - Executing as root@9cd1444b9593 on Linux v6.11.0-1014-azure amd64
13:51:14.611 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
13:51:14.611 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 1:51:14 PM GMT
13:51:14.611 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:51:14.611 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:51:14.611 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
13:51:14.611 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
13:51:14.611 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
13:51:14.611 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
13:51:14.611 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
13:51:14.611 INFO  TestMultiVariantWalker - Inflater: IntelInflater
13:51:14.611 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
13:51:14.611 INFO  TestMultiVariantWalker - Requester pays: disabled
13:51:14.611 INFO  TestMultiVariantWalker - Initializing engine
13:51:14.612 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
13:51:14.614 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
13:51:14.616 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
13:51:14.616 INFO  TestMultiVariantWalker - Done initializing engine
13:51:14.616 INFO  ProgressMeter - Starting traversal
13:51:14.616 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
13:51:14.617 INFO  ProgressMeter -             unmapped              0.0                    14         840000.0
13:51:14.617 INFO  ProgressMeter - Traversal complete. Processed 14 total variants in 0.0 minutes.
13:51:14.617 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 1:51:14 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1918894080
13:51:14.632 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:51:14.632 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g5c95f6f-SNAPSHOT
13:51:14.632 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
13:51:14.632 INFO  TestMultiVariantWalker - Executing as root@9cd1444b9593 on Linux v6.11.0-1014-azure amd64
13:51:14.632 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
13:51:14.632 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 1:51:14 PM GMT
13:51:14.632 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:51:14.632 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:51:14.632 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
13:51:14.632 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
13:51:14.632 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
13:51:14.632 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
13:51:14.632 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
13:51:14.632 INFO  TestMultiVariantWalker - Inflater: IntelInflater
13:51:14.632 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
13:51:14.632 INFO  TestMultiVariantWalker - Requester pays: disabled
13:51:14.633 INFO  TestMultiVariantWalker - Initializing engine
13:51:14.634 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
13:51:14.635 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
13:51:14.636 INFO  IntervalArgumentCollection - Processing 401 bp from intervals
13:51:14.636 INFO  TestMultiVariantWalker - Done initializing engine
13:51:14.637 INFO  ProgressMeter - Starting traversal
13:51:14.637 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
13:51:14.637 INFO  ProgressMeter -             unmapped              0.0                     3         Infinity
13:51:14.637 INFO  ProgressMeter - Traversal complete. Processed 3 total variants in 0.0 minutes.
13:51:14.637 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 1:51:14 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1918894080