Class org.broadinstitute.hellbender.tools.spark.ApplyBQSRSparkIntegrationTest
Tests
| Test |
Duration |
Result |
| testApplyBQSR[0](ApplyBQSR(args='--quantize-quals -1')) |
0.888s |
passed |
| testApplyBQSR[1](ApplyBQSR(args='--quantize-quals 6')) |
0.697s |
passed |
| testApplyBQSR[2](ApplyBQSR(args='null')) |
0.630s |
passed |
| testApplyBQSR[3](ApplyBQSR(args='-OQ')) |
0.603s |
passed |
| testApplyBQSR[4](ApplyBQSR(args='--static-quantized-quals 10 --static-quantized-quals 20 --static-quantized-quals 30')) |
0.584s |
passed |
| testApplyBQSR[5](ApplyBQSR(args='--static-quantized-quals 10 --static-quantized-quals 20 --static-quantized-quals 30 --round-down-quantized')) |
0.586s |
passed |
| testApplyBQSR[6](ApplyBQSR(args='--disable-sequence-dictionary-validation true')) |
0.467s |
passed |
| testPRFailWithLowMaxCycle |
0.183s |
passed |
| testPRNoFailWithHighMaxCycle |
0.461s |
passed |
Standard output
--------------------------------------------------------------------------------
[14:01:52] Executing test ApplyBQSRSparkIntegrationTest:testPRFailWithLowMaxCycle
--------------------------------------------------------------------------------
[14:01:52] Executing test ApplyBQSRSparkIntegrationTest:testPRNoFailWithHighMaxCycle
Standard error
[May 27, 2025 at 2:01:48 PM GMT] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2866806784
[May 27, 2025 at 2:01:49 PM GMT] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2866806784
[May 27, 2025 at 2:01:50 PM GMT] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2866806784
[May 27, 2025 at 2:01:50 PM GMT] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2866806784
[May 27, 2025 at 2:01:51 PM GMT] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2866806784
[May 27, 2025 at 2:01:51 PM GMT] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2866806784
[May 27, 2025 at 2:01:52 PM GMT] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2866806784
[May 27, 2025 at 2:01:52 PM GMT] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2866806784
[May 27, 2025 at 2:01:52 PM GMT] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2866806784