Class org.broadinstitute.hellbender.tools.spark.RevertSamSparkIntegrationTest

all > org.broadinstitute.hellbender.tools.spark > RevertSamSparkIntegrationTest
27

tests
0

failures
0

ignored
9.366s

duration
100%

successful

Tests

Test Duration Result
basicPositiveTests[0](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.sam, null, false, false, true, true, null, null, []) 0.349s passed
basicPositiveTests[10](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.cram, null, true, false, false, false, Hey,Dad!, NewLibraryName, [NM, UQ, PG, MD, MQ, SA, MC, AS, XT]) 0.232s passed
basicPositiveTests[11](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.cram, null, true, true, false, false, null, null, []) 0.235s passed
basicPositiveTests[1](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.sam, queryname, false, false, true, false, Hey,Dad!, null, [NM, UQ, PG, MD, MQ, SA, MC, AS, XT]) 0.179s passed
basicPositiveTests[2](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.sam, null, true, false, false, false, Hey,Dad!, NewLibraryName, [NM, UQ, PG, MD, MQ, SA, MC, AS, XT]) 0.177s passed
basicPositiveTests[3](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.sam, null, true, true, false, false, null, null, []) 0.182s passed
basicPositiveTests[4](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.bam, null, false, false, true, true, null, null, []) 0.562s passed
basicPositiveTests[5](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.bam, queryname, false, false, true, false, Hey,Dad!, null, [NM, UQ, PG, MD, MQ, SA, MC, AS, XT]) 0.254s passed
basicPositiveTests[6](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.bam, null, true, false, false, false, Hey,Dad!, NewLibraryName, [NM, UQ, PG, MD, MQ, SA, MC, AS, XT]) 0.248s passed
basicPositiveTests[7](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.bam, null, true, true, false, false, null, null, []) 0.256s passed
basicPositiveTests[8](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.cram, null, false, false, true, true, null, null, []) 0.510s passed
basicPositiveTests[9](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.cram, queryname, false, false, true, false, Hey,Dad!, null, [NM, UQ, PG, MD, MQ, SA, MC, AS, XT]) 0.237s passed
testFilePathsWithMapFile 0.002s passed
testIsOutputMapHeaderValid 0s passed
testNoRgInfoSanitize 0.218s passed
testOutputByReadGroupWithOutputMap[0](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.sam) 0.360s passed
testOutputByReadGroupWithOutputMap[1](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.bam) 0.573s passed
testOutputByReadGroupWithOutputMap[2](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.cram) 0.505s passed
testSampleLibraryOverride[0](NewSample, null) 0.119s passed
testSampleLibraryOverride[1](null, NewLibrary) 0.126s passed
testSampleLibraryOverride[2](NewSample, NewLibrary) 0.115s passed
testSanitizeAndDeduplicateRecords[0](.sam) 0.341s passed
testSanitizeAndDeduplicateRecords[1](.bam) 0.967s passed
testSanitizeAndDeduplicateRecords[2](.cram) 0.737s passed
testSingleEndSanitize[0](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.sam) 0.285s passed
testSingleEndSanitize[1](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.bam) 0.899s passed
testSingleEndSanitize[2](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.cram) 0.698s passed

Standard error

[May 27, 2025 at 2:03:59 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=950009856
[May 27, 2025 at 2:03:59 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=950009856
[May 27, 2025 at 2:03:59 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=950009856
[May 27, 2025 at 2:03:59 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=950009856
[May 27, 2025 at 2:04:00 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=950009856
[May 27, 2025 at 2:04:00 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=950009856
[May 27, 2025 at 2:04:00 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=950009856
[May 27, 2025 at 2:04:01 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=950009856
[May 27, 2025 at 2:04:01 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=950009856
[May 27, 2025 at 2:04:01 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=950009856
[May 27, 2025 at 2:04:01 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=950009856
[May 27, 2025 at 2:04:02 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=950009856
[May 27, 2025 at 2:04:02 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=950009856
[May 27, 2025 at 2:04:02 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=950009856
[May 27, 2025 at 2:04:03 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=950009856
[May 27, 2025 at 2:04:03 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=950009856
[May 27, 2025 at 2:04:03 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=950009856
[May 27, 2025 at 2:04:04 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=950009856
[May 27, 2025 at 2:04:04 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=950009856
[May 27, 2025 at 2:04:04 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=950009856
[May 27, 2025 at 2:04:05 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=950009856
[May 27, 2025 at 2:04:06 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=950009856
[May 27, 2025 at 2:04:06 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=950009856
[May 27, 2025 at 2:04:07 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=950009856
[May 27, 2025 at 2:04:08 PM GMT] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=950009856