Class org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounterIntegrationTest
Tests
| Test |
Duration |
Result |
| testASEReadCounterFileFormat |
0.269s |
passed |
| testASEReadCounterImproperPairs |
3.145s |
passed |
| testASEReadCounterMinDepth70 |
0.201s |
passed |
| testASEReadCounterMultipleContexts |
0.138s |
passed |
| testASEReadCounterNonRefAllele |
0.136s |
passed |
| testASEReadCounterWarnings |
0.210s |
passed |
| testASEReadCounterWithCountOverlaps |
0.199s |
passed |
| testASEReadCounterWithCountReads |
0.197s |
passed |
| testASEReadCounterWithHighMQ |
0.198s |
passed |
| testASEReadCounterWithHighMQLowBQ |
0.197s |
passed |
| testASEReadCounterWithLowMQ |
0.202s |
passed |
| testASEReadCounterWithLowMQNoDedup |
0.206s |
passed |
Standard output
--------------------------------------------------------------------------------
[14:13:12] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
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[14:13:13] Executing test ASEReadCounterIntegrationTest:test improper pairs
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[14:13:16] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[14:13:17] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[14:13:17] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[14:13:17] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[14:13:17] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[14:13:17] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[14:13:18] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
Standard error
[May 27, 2025 at 2:13:13 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1463812096
[May 27, 2025 at 2:13:16 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.05 minutes.
Runtime.totalMemory()=1463812096
[May 27, 2025 at 2:13:16 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1463812096
[May 27, 2025 at 2:13:16 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1463812096
[May 27, 2025 at 2:13:16 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1463812096
[May 27, 2025 at 2:13:17 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1463812096
[May 27, 2025 at 2:13:17 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1463812096
[May 27, 2025 at 2:13:17 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1463812096
[May 27, 2025 at 2:13:17 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1463812096
[May 27, 2025 at 2:13:17 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1463812096
[May 27, 2025 at 2:13:18 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1463812096
[May 27, 2025 at 2:13:18 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1463812096