Class org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluationIntegrationTest

all > org.broadinstitute.hellbender.tools.walkers.rnaseq > GeneExpressionEvaluationIntegrationTest
11

tests
0

failures
0

ignored
14.420s

duration
100%

successful

Tests

Test Duration Result
assertThatExpectedOutputUpdateToggleIsDisabled 0s passed
testCompareReadStrands[0](/gatkCloneMountPoint/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam, /gatkCloneMountPoint/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3, exon, false) 8.323s passed
testCompareReadStrands[1](/gatkCloneMountPoint/src/test/resources/large/E_Coli_small_rna.bam, /gatkCloneMountPoint/src/test/resources/large/E_Coli.gff3, CDS, true) 2.113s passed
testConsistentWithPast[0](/gatkCloneMountPoint/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam, /gatkCloneMountPoint/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3, PROPORTIONAL, IGNORE, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.proportional.map.ignore.tsv, exon, false) 0.731s passed
testConsistentWithPast[1](/gatkCloneMountPoint/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam, /gatkCloneMountPoint/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3, EQUAL, IGNORE, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.equal.map.ignore.tsv, exon, false) 0.720s passed
testConsistentWithPast[2](/gatkCloneMountPoint/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam, /gatkCloneMountPoint/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3, PROPORTIONAL, EQUAL, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.proportional.map.equal.tsv, exon, false) 0.723s passed
testConsistentWithPast[3](/gatkCloneMountPoint/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam, /gatkCloneMountPoint/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3, EQUAL, EQUAL, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.equal.map.equal.tsv, exon, false) 0.830s passed
testConsistentWithPast[4](/gatkCloneMountPoint/src/test/resources/large/E_Coli_small_rna.bam, /gatkCloneMountPoint/src/test/resources/large/E_Coli.gff3, PROPORTIONAL, IGNORE, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.proportional.map.ignore.tsv, CDS, true) 0.248s passed
testConsistentWithPast[5](/gatkCloneMountPoint/src/test/resources/large/E_Coli_small_rna.bam, /gatkCloneMountPoint/src/test/resources/large/E_Coli.gff3, EQUAL, IGNORE, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.equal.map.ignore.tsv, CDS, true) 0.242s passed
testConsistentWithPast[6](/gatkCloneMountPoint/src/test/resources/large/E_Coli_small_rna.bam, /gatkCloneMountPoint/src/test/resources/large/E_Coli.gff3, PROPORTIONAL, EQUAL, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.proportional.map.equal.tsv, CDS, true) 0.242s passed
testConsistentWithPast[7](/gatkCloneMountPoint/src/test/resources/large/E_Coli_small_rna.bam, /gatkCloneMountPoint/src/test/resources/large/E_Coli.gff3, EQUAL, EQUAL, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.equal.map.equal.tsv, CDS, true) 0.248s passed

Standard error

[May 27, 2025 at 2:13:19 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=1539309568
[May 27, 2025 at 2:13:20 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=2222981120
[May 27, 2025 at 2:13:21 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=2222981120
[May 27, 2025 at 2:13:22 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=2602565632
[May 27, 2025 at 2:13:23 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2900361216
[May 27, 2025 at 2:13:24 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2900361216
[May 27, 2025 at 2:13:25 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2202009600
[May 27, 2025 at 2:13:26 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2789212160
[May 27, 2025 at 2:13:26 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2789212160
[May 27, 2025 at 2:13:27 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2789212160
[May 27, 2025 at 2:13:27 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2789212160
[May 27, 2025 at 2:13:27 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2789212160
[May 27, 2025 at 2:13:27 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2789212160
[May 27, 2025 at 2:13:28 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2789212160
[May 27, 2025 at 2:13:28 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2789212160
[May 27, 2025 at 2:13:28 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2789212160
[May 27, 2025 at 2:13:29 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2789212160
[May 27, 2025 at 2:13:30 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2789212160
[May 27, 2025 at 2:13:30 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2789212160
[May 27, 2025 at 2:13:31 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2789212160
[May 27, 2025 at 2:13:31 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2789212160
[May 27, 2025 at 2:13:32 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2789212160
[May 27, 2025 at 2:13:32 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2789212160
[May 27, 2025 at 2:13:32 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2789212160