Class org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReadsIntegrationTest
Tests
| Test |
Duration |
Result |
| testLargeFileThatForcesSnappyUsage |
10.866s |
passed |
| testSplitsFixNDN |
0.126s |
passed |
| testSplitsOfUnpairedAndUnmappedReads |
1.708s |
passed |
| testSplitsTargetRegionFunctionality |
0.277s |
passed |
| testSplitsWithOverhangs |
0.339s |
passed |
| testSplitsWithOverhangs0Mismatches |
0.339s |
passed |
| testSplitsWithOverhangs5BasesInOverhang |
0.353s |
passed |
| testSplitsWithOverhangsNotClipping |
0.345s |
passed |
| testSplitsWithoutSecondaryAlignments |
0.479s |
passed |
Standard output
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[14:13:43] Executing test SplitNCigarReadsIntegrationTest:test fix NDN
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[14:13:43] Executing test SplitNCigarReadsIntegrationTest:regression test for unmapped and unpaired reads
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[14:13:45] Executing test SplitNCigarReadsIntegrationTest:regression test for unmapped and unpaired reads
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[14:13:45] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs
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[14:13:45] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs 0 mismatches
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[14:13:46] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs 5 bases in overhang
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[14:13:46] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs not clipping
--------------------------------------------------------------------------------
[14:13:47] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs
Standard error
[May 27, 2025 at 2:13:43 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.18 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 2:13:43 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 2:13:45 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 2:13:45 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 2:13:45 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 2:13:46 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
[May 27, 2025 at 2:13:46 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
[May 27, 2025 at 2:13:46 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
[May 27, 2025 at 2:13:47 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=545259520