Class org.broadinstitute.hellbender.tools.walkers.variantutils.UpdateVCFSequenceDictionaryIntegrationTest

all > org.broadinstitute.hellbender.tools.walkers.variantutils > UpdateVCFSequenceDictionaryIntegrationTest
14

tests
0

failures
0

ignored
1.208s

duration
100%

successful

Tests

Test Duration Result
testBadContigLengthWithValidation 0.086s passed
testBadUpdateSequenceDictionary[0](src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/UpdateVCFSequenceDictionary/variantsWithDict.vcf, src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/UpdateVCFSequenceDictionary/variantsWithDict.vcf, null, null, false, false) 0.084s passed
testBadUpdateSequenceDictionary[1](src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/UpdateVCFSequenceDictionary/variantsNoDict.vcf, src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/UpdateVCFSequenceDictionary/variantsNoDict.vcf, null, null, false, false) 0.083s passed
testBadUpdateSequenceDictionary[2](src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/UpdateVCFSequenceDictionary/variantsNoDictWithBadContig.vcf, src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/UpdateVCFSequenceDictionary/variantsWithDict.vcf, null, null, false, false) 0.090s passed
testBadUpdateSequenceDictionary[3](src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/UpdateVCFSequenceDictionary/variantsNoDictWithBadContigLength.vcf, src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/UpdateVCFSequenceDictionary/variantsWithDict.vcf, null, null, false, false) 0.090s passed
testGoodUpdateSequenceDictionary[0](src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/UpdateVCFSequenceDictionary/variantsNoDict.vcf, src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/UpdateVCFSequenceDictionary/variantsWithDict.vcf, null, null, false, false) 0.087s passed
testGoodUpdateSequenceDictionary[1](src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/UpdateVCFSequenceDictionary/variantsNoDict.vcf, null, src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/UpdateVCFSequenceDictionary/exampleFASTA.fasta, null, false, false) 0.086s passed
testGoodUpdateSequenceDictionary[2](src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/UpdateVCFSequenceDictionary/variantsNoDict.vcf, src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/UpdateVCFSequenceDictionary/exampleFASTA.fasta, null, null, false, false) 0.090s passed
testGoodUpdateSequenceDictionary[3](src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/UpdateVCFSequenceDictionary/variantsNoDict.vcf, src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/UpdateVCFSequenceDictionary/exampleFASTA.dict, null, null, false, false) 0.084s passed
testGoodUpdateSequenceDictionary[4](src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/UpdateVCFSequenceDictionary/variantsNoDict.vcf, src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/UpdateVCFSequenceDictionary/exampleBAM.bam, null, null, false, false) 0.085s passed
testGoodUpdateSequenceDictionary[5](src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/UpdateVCFSequenceDictionary/variantsWithSubsetDict.vcf, src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/UpdateVCFSequenceDictionary/exampleFASTA.dict, null, null, true, false) 0.091s passed
testGoodUpdateSequenceDictionary[6](src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/UpdateVCFSequenceDictionary/variantsWithDictBadContigLength.vcf, src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/UpdateVCFSequenceDictionary/exampleFASTA.dict, null, null, true, true) 0.084s passed
testMasterDictionaryAmbiguous 0.083s passed
testUseMasterDictionary 0.085s passed

Standard error

[May 27, 2025 at 2:15:46 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.UpdateVCFSequenceDictionary done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 2:15:46 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.UpdateVCFSequenceDictionary done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 2:15:46 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.UpdateVCFSequenceDictionary done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 2:15:46 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.UpdateVCFSequenceDictionary done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 2:15:46 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.UpdateVCFSequenceDictionary done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 2:15:46 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.UpdateVCFSequenceDictionary done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 2:15:47 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.UpdateVCFSequenceDictionary done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 2:15:47 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.UpdateVCFSequenceDictionary done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 2:15:47 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.UpdateVCFSequenceDictionary done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 2:15:47 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.UpdateVCFSequenceDictionary done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 2:15:47 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.UpdateVCFSequenceDictionary done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 2:15:47 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.UpdateVCFSequenceDictionary done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 2:15:47 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.UpdateVCFSequenceDictionary done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 2:15:47 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.UpdateVCFSequenceDictionary done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000