Class org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest

all > org.broadinstitute.hellbender.engine > MultiVariantWalkerIntegrationTest
tests
failures
ignored
3.204s
duration
100%
successful
Tests
Standard error
Tests

Test	Duration	Result
testDuplicateSources	0.011s	passed
testGetCompatibleHeader	0.018s	passed
testGetConflictingHeader	0.009s	passed
testIteratorOverlapping	0.012s	passed
testNoDictionaryForAllInputs	0.011s	passed
testNoDictionaryForOneInput	0.010s	passed
testNoDictionaryForOnlyInput	0.008s	passed
testVariantOrder[0]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf], null, 26)	0.009s	passed
testVariantOrder[1]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf], null, 13)	0.008s	passed
testVariantOrder[2]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf], null, 26)	0.010s	passed
testVariantOrder[3]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_1.vcf, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_2.vcf], null, 26)	0.013s	passed
testVariantOrder[4]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf], 1, 14)	0.010s	passed
testVariantOrder[5]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf], 1, 7)	0.008s	passed
testVariantOrder[6]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf], 1, 14)	0.011s	passed
testVariantOrder[7]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf], 2:200-600, 3)	0.010s	passed
testVariantsFromBundleOrder[0](gs://hellbender-test-logs/staging/remoteBundles/remote_bundle_testa62c1838-dc80-4a2a-950e-ac42102a2ad6dir/remote_bundle.json, 1, 14)	1.584s	passed
testVariantsFromBundleOrder[1](gs://hellbender-test-logs/staging/remoteBundles/remote_bundle_testcba0c7fa-42e5-469b-a049-8f23b233f4bbdir/remote_bundle.json, 2:200-600, 3)	1.462s	passed
Standard error

13:37:06.325 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:06.325 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
13:37:06.325 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
13:37:06.325 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
13:37:06.325 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
13:37:06.325 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 1:37:06 PM UTC
13:37:06.325 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:06.325 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:06.326 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
13:37:06.326 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
13:37:06.326 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
13:37:06.326 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
13:37:06.326 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
13:37:06.326 INFO  TestMultiVariantWalker - Inflater: IntelInflater
13:37:06.326 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
13:37:06.326 INFO  TestMultiVariantWalker - Requester pays: disabled
13:37:06.326 INFO  TestMultiVariantWalker - Initializing engine
13:37:06.328 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
13:37:06.330 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 1:37:06 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1824522240
13:37:06.336 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:06.336 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
13:37:06.336 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
13:37:06.336 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
13:37:06.336 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
13:37:06.336 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 1:37:06 PM UTC
13:37:06.336 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:06.336 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:06.337 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
13:37:06.337 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
13:37:06.337 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
13:37:06.337 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
13:37:06.337 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
13:37:06.337 INFO  TestMultiVariantWalker - Inflater: IntelInflater
13:37:06.337 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
13:37:06.337 INFO  TestMultiVariantWalker - Requester pays: disabled
13:37:06.337 INFO  TestMultiVariantWalker - Initializing engine
13:37:06.339 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
13:37:06.340 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
13:37:06.344 INFO  TestMultiVariantWalker - Done initializing engine
13:37:06.344 INFO  ProgressMeter - Starting traversal
13:37:06.344 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
13:37:06.347 INFO  ProgressMeter -             unmapped              0.0                    26         520000.0
13:37:06.348 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
13:37:06.348 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 1:37:06 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1824522240
13:37:06.353 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:06.353 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
13:37:06.353 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
13:37:06.353 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
13:37:06.354 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
13:37:06.354 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 1:37:06 PM UTC
13:37:06.354 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:06.354 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:06.354 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
13:37:06.354 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
13:37:06.354 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
13:37:06.354 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
13:37:06.354 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
13:37:06.354 INFO  TestMultiVariantWalker - Inflater: IntelInflater
13:37:06.354 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
13:37:06.355 INFO  TestMultiVariantWalker - Requester pays: disabled
13:37:06.355 INFO  TestMultiVariantWalker - Initializing engine
13:37:06.355 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
13:37:06.357 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariantsConflictingDictionary.vcf
13:37:06.358 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 1:37:06 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1824522240
13:37:06.363 INFO  TestMultiVariantWalkerIterator - ------------------------------------------------------------
13:37:06.363 INFO  TestMultiVariantWalkerIterator - org.broadinstitute.hellbender.engine vUnavailable
13:37:06.363 INFO  TestMultiVariantWalkerIterator - For support and documentation go to https://software.broadinstitute.org/gatk/
13:37:06.363 INFO  TestMultiVariantWalkerIterator - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
13:37:06.364 INFO  TestMultiVariantWalkerIterator - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
13:37:06.364 INFO  TestMultiVariantWalkerIterator - Start Date/Time: May 27, 2025 at 1:37:06 PM UTC
13:37:06.364 INFO  TestMultiVariantWalkerIterator - ------------------------------------------------------------
13:37:06.364 INFO  TestMultiVariantWalkerIterator - ------------------------------------------------------------
13:37:06.364 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.COMPRESSION_LEVEL : 2
13:37:06.364 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
13:37:06.364 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
13:37:06.364 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
13:37:06.364 INFO  TestMultiVariantWalkerIterator - Deflater: IntelDeflater
13:37:06.365 INFO  TestMultiVariantWalkerIterator - Inflater: IntelInflater
13:37:06.365 INFO  TestMultiVariantWalkerIterator - GCS max retries/reopens: 20
13:37:06.365 INFO  TestMultiVariantWalkerIterator - Requester pays: disabled
13:37:06.365 INFO  TestMultiVariantWalkerIterator - Initializing engine
13:37:06.366 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_WithOverlap.vcf
13:37:06.367 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_WithOverlap.vcf
13:37:06.369 INFO  TestMultiVariantWalkerIterator - Done initializing engine
13:37:06.369 INFO  ProgressMeter - Starting traversal
13:37:06.369 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
13:37:06.370 INFO  ProgressMeter -             unmapped              0.0                    28        1680000.0
13:37:06.370 INFO  ProgressMeter - Traversal complete. Processed 28 total variants in 0.0 minutes.
13:37:06.370 INFO  TestMultiVariantWalkerIterator - Shutting down engine
[May 27, 2025 at 1:37:06 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalkerIterator done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1824522240
13:37:06.376 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:06.377 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
13:37:06.377 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
13:37:06.377 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
13:37:06.377 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
13:37:06.377 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 1:37:06 PM UTC
13:37:06.377 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:06.377 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:06.377 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
13:37:06.377 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
13:37:06.377 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
13:37:06.377 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
13:37:06.377 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
13:37:06.377 INFO  TestMultiVariantWalker - Inflater: IntelInflater
13:37:06.377 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
13:37:06.377 INFO  TestMultiVariantWalker - Requester pays: disabled
13:37:06.378 INFO  TestMultiVariantWalker - Initializing engine
13:37:06.379 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf
13:37:06.380 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf
13:37:06.381 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf. The input may not exist or may not have a valid header
13:37:06.382 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf. The input may not exist or may not have a valid header
13:37:06.382 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 1:37:06 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1824522240
13:37:06.387 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:06.387 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
13:37:06.387 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
13:37:06.387 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
13:37:06.387 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
13:37:06.387 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 1:37:06 PM UTC
13:37:06.387 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:06.388 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:06.388 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
13:37:06.388 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
13:37:06.388 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
13:37:06.388 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
13:37:06.388 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
13:37:06.388 INFO  TestMultiVariantWalker - Inflater: IntelInflater
13:37:06.388 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
13:37:06.388 INFO  TestMultiVariantWalker - Requester pays: disabled
13:37:06.388 INFO  TestMultiVariantWalker - Initializing engine
13:37:06.389 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
13:37:06.390 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf
13:37:06.391 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf. The input may not exist or may not have a valid header
13:37:06.391 INFO  TestMultiVariantWalker - Done initializing engine
13:37:06.391 INFO  ProgressMeter - Starting traversal
13:37:06.391 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
13:37:06.393 INFO  ProgressMeter -             unmapped              0.0                    26         Infinity
13:37:06.393 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
13:37:06.393 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 1:37:06 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1824522240
13:37:06.398 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:06.398 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
13:37:06.398 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
13:37:06.398 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
13:37:06.398 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
13:37:06.398 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 1:37:06 PM UTC
13:37:06.398 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:06.398 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:06.399 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
13:37:06.399 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
13:37:06.399 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
13:37:06.399 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
13:37:06.399 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
13:37:06.399 INFO  TestMultiVariantWalker - Inflater: IntelInflater
13:37:06.399 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
13:37:06.399 INFO  TestMultiVariantWalker - Requester pays: disabled
13:37:06.399 INFO  TestMultiVariantWalker - Initializing engine
13:37:06.400 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf
13:37:06.401 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf. The input may not exist or may not have a valid header
13:37:06.401 INFO  TestMultiVariantWalker - Done initializing engine
13:37:06.401 INFO  ProgressMeter - Starting traversal
13:37:06.401 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
13:37:06.401 INFO  ProgressMeter -             unmapped              0.0                    13         Infinity
13:37:06.401 INFO  ProgressMeter - Traversal complete. Processed 13 total variants in 0.0 minutes.
13:37:06.401 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 1:37:06 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1824522240
13:37:06.407 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:06.407 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
13:37:06.407 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
13:37:06.407 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
13:37:06.407 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
13:37:06.407 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 1:37:06 PM UTC
13:37:06.407 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:06.407 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:06.407 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
13:37:06.408 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
13:37:06.408 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
13:37:06.408 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
13:37:06.408 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
13:37:06.408 INFO  TestMultiVariantWalker - Inflater: IntelInflater
13:37:06.408 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
13:37:06.408 INFO  TestMultiVariantWalker - Requester pays: disabled
13:37:06.408 INFO  TestMultiVariantWalker - Initializing engine
13:37:06.409 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
13:37:06.410 INFO  TestMultiVariantWalker - Done initializing engine
13:37:06.410 INFO  ProgressMeter - Starting traversal
13:37:06.410 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
13:37:06.410 INFO  ProgressMeter -             unmapped              0.0                    26         Infinity
13:37:06.410 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
13:37:06.410 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 1:37:06 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1824522240
13:37:06.415 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:06.415 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
13:37:06.415 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
13:37:06.415 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
13:37:06.415 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
13:37:06.415 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 1:37:06 PM UTC
13:37:06.415 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:06.415 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:06.416 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
13:37:06.416 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
13:37:06.416 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
13:37:06.416 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
13:37:06.416 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
13:37:06.416 INFO  TestMultiVariantWalker - Inflater: IntelInflater
13:37:06.416 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
13:37:06.416 INFO  TestMultiVariantWalker - Requester pays: disabled
13:37:06.416 INFO  TestMultiVariantWalker - Initializing engine
13:37:06.417 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
13:37:06.418 INFO  TestMultiVariantWalker - Done initializing engine
13:37:06.418 INFO  ProgressMeter - Starting traversal
13:37:06.418 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
13:37:06.418 INFO  ProgressMeter -             unmapped              0.0                    13         Infinity
13:37:06.418 INFO  ProgressMeter - Traversal complete. Processed 13 total variants in 0.0 minutes.
13:37:06.418 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 1:37:06 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1824522240
13:37:06.423 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:06.423 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
13:37:06.423 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
13:37:06.423 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
13:37:06.423 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
13:37:06.423 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 1:37:06 PM UTC
13:37:06.423 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:06.423 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:06.424 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
13:37:06.424 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
13:37:06.424 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
13:37:06.424 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
13:37:06.424 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
13:37:06.424 INFO  TestMultiVariantWalker - Inflater: IntelInflater
13:37:06.424 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
13:37:06.424 INFO  TestMultiVariantWalker - Requester pays: disabled
13:37:06.424 INFO  TestMultiVariantWalker - Initializing engine
13:37:06.425 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
13:37:06.426 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
13:37:06.427 INFO  TestMultiVariantWalker - Done initializing engine
13:37:06.427 INFO  ProgressMeter - Starting traversal
13:37:06.427 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
13:37:06.428 INFO  ProgressMeter -             unmapped              0.0                    26         Infinity
13:37:06.428 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
13:37:06.428 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 1:37:06 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1824522240
13:37:06.434 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:06.434 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
13:37:06.434 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
13:37:06.434 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
13:37:06.434 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
13:37:06.434 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 1:37:06 PM UTC
13:37:06.434 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:06.434 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:06.435 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
13:37:06.435 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
13:37:06.435 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
13:37:06.435 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
13:37:06.435 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
13:37:06.435 INFO  TestMultiVariantWalker - Inflater: IntelInflater
13:37:06.435 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
13:37:06.435 INFO  TestMultiVariantWalker - Requester pays: disabled
13:37:06.435 INFO  TestMultiVariantWalker - Initializing engine
13:37:06.436 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_1.vcf
13:37:06.438 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_2.vcf
13:37:06.440 INFO  TestMultiVariantWalker - Done initializing engine
13:37:06.440 INFO  ProgressMeter - Starting traversal
13:37:06.440 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
13:37:06.442 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
13:37:06.442 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
13:37:06.442 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 1:37:06 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1824522240
13:37:06.447 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:06.447 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
13:37:06.448 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
13:37:06.448 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
13:37:06.448 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
13:37:06.448 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 1:37:06 PM UTC
13:37:06.448 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:06.448 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:06.448 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
13:37:06.448 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
13:37:06.448 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
13:37:06.448 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
13:37:06.448 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
13:37:06.448 INFO  TestMultiVariantWalker - Inflater: IntelInflater
13:37:06.448 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
13:37:06.449 INFO  TestMultiVariantWalker - Requester pays: disabled
13:37:06.449 INFO  TestMultiVariantWalker - Initializing engine
13:37:06.450 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
13:37:06.451 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
13:37:06.451 INFO  TestMultiVariantWalker - Done initializing engine
13:37:06.451 INFO  ProgressMeter - Starting traversal
13:37:06.451 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
13:37:06.452 INFO  ProgressMeter -             unmapped              0.0                    14         840000.0
13:37:06.452 INFO  ProgressMeter - Traversal complete. Processed 14 total variants in 0.0 minutes.
13:37:06.452 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 1:37:06 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1824522240
13:37:06.458 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:06.458 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
13:37:06.458 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
13:37:06.458 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
13:37:06.458 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
13:37:06.458 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 1:37:06 PM UTC
13:37:06.458 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:06.458 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:06.458 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
13:37:06.458 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
13:37:06.458 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
13:37:06.458 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
13:37:06.458 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
13:37:06.458 INFO  TestMultiVariantWalker - Inflater: IntelInflater
13:37:06.458 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
13:37:06.458 INFO  TestMultiVariantWalker - Requester pays: disabled
13:37:06.458 INFO  TestMultiVariantWalker - Initializing engine
13:37:06.459 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
13:37:06.460 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
13:37:06.460 INFO  TestMultiVariantWalker - Done initializing engine
13:37:06.460 INFO  ProgressMeter - Starting traversal
13:37:06.460 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
13:37:06.461 INFO  ProgressMeter -             unmapped              0.0                     7         Infinity
13:37:06.461 INFO  ProgressMeter - Traversal complete. Processed 7 total variants in 0.0 minutes.
13:37:06.461 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 1:37:06 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1824522240
13:37:06.465 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:06.465 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
13:37:06.465 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
13:37:06.465 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
13:37:06.466 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
13:37:06.466 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 1:37:06 PM UTC
13:37:06.466 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:06.466 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:06.466 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
13:37:06.466 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
13:37:06.466 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
13:37:06.466 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
13:37:06.466 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
13:37:06.466 INFO  TestMultiVariantWalker - Inflater: IntelInflater
13:37:06.466 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
13:37:06.466 INFO  TestMultiVariantWalker - Requester pays: disabled
13:37:06.466 INFO  TestMultiVariantWalker - Initializing engine
13:37:06.467 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
13:37:06.469 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
13:37:06.470 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
13:37:06.470 INFO  TestMultiVariantWalker - Done initializing engine
13:37:06.470 INFO  ProgressMeter - Starting traversal
13:37:06.470 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
13:37:06.471 INFO  ProgressMeter -             unmapped              0.0                    14         840000.0
13:37:06.471 INFO  ProgressMeter - Traversal complete. Processed 14 total variants in 0.0 minutes.
13:37:06.471 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 1:37:06 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1824522240
13:37:06.476 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:06.476 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
13:37:06.476 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
13:37:06.476 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
13:37:06.476 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
13:37:06.476 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 1:37:06 PM UTC
13:37:06.477 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:06.477 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:06.477 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
13:37:06.477 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
13:37:06.477 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
13:37:06.477 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
13:37:06.477 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
13:37:06.477 INFO  TestMultiVariantWalker - Inflater: IntelInflater
13:37:06.477 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
13:37:06.477 INFO  TestMultiVariantWalker - Requester pays: disabled
13:37:06.477 INFO  TestMultiVariantWalker - Initializing engine
13:37:06.478 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
13:37:06.479 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
13:37:06.481 INFO  IntervalArgumentCollection - Processing 401 bp from intervals
13:37:06.481 INFO  TestMultiVariantWalker - Done initializing engine
13:37:06.481 INFO  ProgressMeter - Starting traversal
13:37:06.481 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
13:37:06.481 INFO  ProgressMeter -             unmapped              0.0                     3         Infinity
13:37:06.481 INFO  ProgressMeter - Traversal complete. Processed 3 total variants in 0.0 minutes.
13:37:06.482 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 1:37:06 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1824522240
13:37:08.537 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:08.537 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
13:37:08.537 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
13:37:08.538 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
13:37:08.538 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
13:37:08.538 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 1:37:08 PM UTC
13:37:08.538 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:08.538 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:08.538 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
13:37:08.538 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
13:37:08.538 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
13:37:08.538 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
13:37:08.538 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
13:37:08.538 INFO  TestMultiVariantWalker - Inflater: IntelInflater
13:37:08.538 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
13:37:08.538 INFO  TestMultiVariantWalker - Requester pays: disabled
13:37:08.538 INFO  TestMultiVariantWalker - Initializing engine
13:37:09.209 INFO  FeatureManager - Using codec VCFCodec to read file gs://hellbender-test-logs/staging/remoteBundles/remote_bundle_testa62c1838-dc80-4a2a-950e-ac42102a2ad6dir/interleavedVariants_1.vcf
13:37:09.762 INFO  FeatureManager - Using codec VCFCodec to read file gs://hellbender-test-logs/staging/remoteBundles/remote_bundle_testa62c1838-dc80-4a2a-950e-ac42102a2ad6dir/interleavedVariants_2.vcf
13:37:10.008 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
13:37:10.009 INFO  TestMultiVariantWalker - Done initializing engine
13:37:10.009 INFO  ProgressMeter - Starting traversal
13:37:10.009 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
13:37:10.114 INFO  ProgressMeter -             unmapped              0.0                    14           8000.0
13:37:10.114 INFO  ProgressMeter - Traversal complete. Processed 14 total variants in 0.0 minutes.
13:37:10.114 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 1:37:10 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.03 minutes.
Runtime.totalMemory()=1824522240
13:37:10.121 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:10.121 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
13:37:10.121 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
13:37:10.121 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
13:37:10.121 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
13:37:10.121 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 1:37:10 PM UTC
13:37:10.121 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:10.122 INFO  TestMultiVariantWalker - ------------------------------------------------------------
13:37:10.122 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
13:37:10.122 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
13:37:10.122 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
13:37:10.122 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
13:37:10.122 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
13:37:10.122 INFO  TestMultiVariantWalker - Inflater: IntelInflater
13:37:10.122 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
13:37:10.122 INFO  TestMultiVariantWalker - Requester pays: disabled
13:37:10.122 INFO  TestMultiVariantWalker - Initializing engine
13:37:10.706 INFO  FeatureManager - Using codec VCFCodec to read file gs://hellbender-test-logs/staging/remoteBundles/remote_bundle_testcba0c7fa-42e5-469b-a049-8f23b233f4bbdir/interleavedVariants_1.vcf
13:37:11.229 INFO  FeatureManager - Using codec VCFCodec to read file gs://hellbender-test-logs/staging/remoteBundles/remote_bundle_testcba0c7fa-42e5-469b-a049-8f23b233f4bbdir/interleavedVariants_2.vcf
13:37:11.471 INFO  IntervalArgumentCollection - Processing 401 bp from intervals
13:37:11.471 INFO  TestMultiVariantWalker - Done initializing engine
13:37:11.471 INFO  ProgressMeter - Starting traversal
13:37:11.471 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
13:37:11.577 INFO  ProgressMeter -             unmapped              0.0                     3           1698.1
13:37:11.577 INFO  ProgressMeter - Traversal complete. Processed 3 total variants in 0.0 minutes.
13:37:11.577 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 1:37:11 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=1824522240