Class org.broadinstitute.hellbender.tools.GetSampleNameIntegrationTest
Tests
| Test |
Duration |
Result |
| testBasicUsage |
0.078s |
passed |
| testMultiSampleBam |
0.087s |
passed |
| testUrlEncoding |
0.073s |
passed |
Standard error
13:40:07.660 INFO GetSampleName - ------------------------------------------------------------
13:40:07.660 INFO GetSampleName - org.broadinstitute.hellbender.tools vUnavailable
13:40:07.660 INFO GetSampleName - For support and documentation go to https://software.broadinstitute.org/gatk/
13:40:07.660 INFO GetSampleName - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
13:40:07.660 INFO GetSampleName - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
13:40:07.660 INFO GetSampleName - Start Date/Time: May 27, 2025 at 1:40:07 PM UTC
13:40:07.660 INFO GetSampleName - ------------------------------------------------------------
13:40:07.660 INFO GetSampleName - ------------------------------------------------------------
13:40:07.660 INFO GetSampleName - HTSJDK Defaults.COMPRESSION_LEVEL : 2
13:40:07.660 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
13:40:07.660 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
13:40:07.660 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
13:40:07.660 INFO GetSampleName - Deflater: IntelDeflater
13:40:07.660 INFO GetSampleName - Inflater: IntelInflater
13:40:07.660 INFO GetSampleName - GCS max retries/reopens: 20
13:40:07.660 INFO GetSampleName - Requester pays: disabled
13:40:07.660 INFO GetSampleName - Initializing engine
13:40:07.661 INFO GetSampleName - Done initializing engine
13:40:07.662 INFO ProgressMeter - Starting traversal
13:40:07.662 INFO ProgressMeter - Current Locus Elapsed Minutes Records Processed Records/Minute
13:40:07.662 INFO ProgressMeter - unmapped 0.0 0 NaN
13:40:07.662 INFO ProgressMeter - Traversal complete. Processed 0 total records in 0.0 minutes.
13:40:07.662 INFO GetSampleName - Shutting down engine
[May 27, 2025 at 1:40:07 PM UTC] org.broadinstitute.hellbender.tools.GetSampleName done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 1:40:07 PM UTC] org.broadinstitute.hellbender.tools.GetSampleName done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
13:40:07.820 INFO GetSampleName - ------------------------------------------------------------
13:40:07.821 INFO GetSampleName - org.broadinstitute.hellbender.tools vUnavailable
13:40:07.821 INFO GetSampleName - For support and documentation go to https://software.broadinstitute.org/gatk/
13:40:07.821 INFO GetSampleName - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
13:40:07.821 INFO GetSampleName - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
13:40:07.821 INFO GetSampleName - Start Date/Time: May 27, 2025 at 1:40:07 PM UTC
13:40:07.821 INFO GetSampleName - ------------------------------------------------------------
13:40:07.821 INFO GetSampleName - ------------------------------------------------------------
13:40:07.821 INFO GetSampleName - HTSJDK Defaults.COMPRESSION_LEVEL : 2
13:40:07.821 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
13:40:07.821 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
13:40:07.821 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
13:40:07.821 INFO GetSampleName - Deflater: IntelDeflater
13:40:07.821 INFO GetSampleName - Inflater: IntelInflater
13:40:07.821 INFO GetSampleName - GCS max retries/reopens: 20
13:40:07.821 INFO GetSampleName - Requester pays: disabled
13:40:07.821 INFO GetSampleName - Initializing engine
13:40:07.822 INFO GetSampleName - Done initializing engine
13:40:07.822 INFO ProgressMeter - Starting traversal
13:40:07.822 INFO ProgressMeter - Current Locus Elapsed Minutes Records Processed Records/Minute
13:40:07.822 INFO ProgressMeter - unmapped 0.0 0 NaN
13:40:07.822 INFO ProgressMeter - Traversal complete. Processed 0 total records in 0.0 minutes.
13:40:07.822 INFO GetSampleName - Shutting down engine
[May 27, 2025 at 1:40:07 PM UTC] org.broadinstitute.hellbender.tools.GetSampleName done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000