Class org.broadinstitute.hellbender.tools.SplitReadsIntegrationTest

35

tests

0

failures

0

ignored

4.023s

duration

100%

successful

Tests

Test Duration Result
testSplitReadsByReadGroup[0](TypeImpl{name='CRAM', fileExtension='cram', indexExtension='crai'}, split_reads, [], {=19}) 0.085s passed
testSplitReadsByReadGroup[10](TypeImpl{name='BAM', fileExtension='bam', indexExtension='bai'}, split_reads, [LB], {.whatever=19}) 0.073s passed
testSplitReadsByReadGroup[11](TypeImpl{name='BAM', fileExtension='bam', indexExtension='bai'}, split_reads, [SM, RG], {.Momma.0=17, .Poppa.1=2}) 0.171s passed
testSplitReadsByReadGroup[12](TypeImpl{name='BAM', fileExtension='bam', indexExtension='bai'}, split_reads, [SM, RG, LB], {.Momma.0.whatever=17}) 0.127s passed
testSplitReadsByReadGroup[13](TypeImpl{name='BAM', fileExtension='bam', indexExtension='bai'}, split_reads_missing_lib, [LB], {.unknown=17, .whatever=2}) 0.173s passed
testSplitReadsByReadGroup[14](TypeImpl{name='SAM', fileExtension='sam', indexExtension='null'}, split_reads, [], {=19}) 0.120s passed
testSplitReadsByReadGroup[15](TypeImpl{name='SAM', fileExtension='sam', indexExtension='null'}, split_reads, [SM], {.Momma=17, .Poppa=2}) 0.173s passed
testSplitReadsByReadGroup[16](TypeImpl{name='SAM', fileExtension='sam', indexExtension='null'}, split_reads, [RG], {.0=17, .1=2}) 0.173s passed
testSplitReadsByReadGroup[17](TypeImpl{name='SAM', fileExtension='sam', indexExtension='null'}, split_reads, [LB], {.whatever=19}) 0.122s passed
testSplitReadsByReadGroup[18](TypeImpl{name='SAM', fileExtension='sam', indexExtension='null'}, split_reads, [SM, RG], {.Momma.0=17, .Poppa.1=2}) 0.173s passed
testSplitReadsByReadGroup[19](TypeImpl{name='SAM', fileExtension='sam', indexExtension='null'}, split_reads, [SM, RG, LB], {.Momma.0.whatever=17}) 0.170s passed
testSplitReadsByReadGroup[1](TypeImpl{name='CRAM', fileExtension='cram', indexExtension='crai'}, split_reads, [SM], {.Momma=17, .Poppa=2}) 0.082s passed
testSplitReadsByReadGroup[20](TypeImpl{name='SAM', fileExtension='sam', indexExtension='null'}, split_reads_missing_lib, [LB], {.unknown=17, .whatever=2}) 0.119s passed
testSplitReadsByReadGroup[21](TypeImpl{name='BAM', fileExtension='bam', indexExtension='csi'}, split_reads, [], {=19}) 0.072s passed
testSplitReadsByReadGroup[22](TypeImpl{name='BAM', fileExtension='bam', indexExtension='csi'}, split_reads, [SM], {.Momma=17, .Poppa=2}) 0.120s passed
testSplitReadsByReadGroup[23](TypeImpl{name='BAM', fileExtension='bam', indexExtension='csi'}, split_reads, [RG], {.0=17, .1=2}) 0.123s passed
testSplitReadsByReadGroup[24](TypeImpl{name='BAM', fileExtension='bam', indexExtension='csi'}, split_reads, [LB], {.whatever=19}) 0.069s passed
testSplitReadsByReadGroup[25](TypeImpl{name='BAM', fileExtension='bam', indexExtension='csi'}, split_reads, [SM, RG], {.Momma.0=17, .Poppa.1=2}) 0.170s passed
testSplitReadsByReadGroup[26](TypeImpl{name='BAM', fileExtension='bam', indexExtension='csi'}, split_reads, [SM, RG, LB], {.Momma.0.whatever=17}) 0.123s passed
testSplitReadsByReadGroup[27](TypeImpl{name='BAM', fileExtension='bam', indexExtension='csi'}, split_reads_missing_lib, [LB], {.unknown=17, .whatever=2}) 0.120s passed
testSplitReadsByReadGroup[28](TypeImpl{name='BAM', fileExtension='bam', indexExtension='null'}, split_reads, [], {=19}) 0.067s passed
testSplitReadsByReadGroup[29](TypeImpl{name='BAM', fileExtension='bam', indexExtension='null'}, split_reads, [SM], {.Momma=17, .Poppa=2}) 0.116s passed
testSplitReadsByReadGroup[2](TypeImpl{name='CRAM', fileExtension='cram', indexExtension='crai'}, split_reads, [RG], {.0=17, .1=2}) 0.078s passed
testSplitReadsByReadGroup[30](TypeImpl{name='BAM', fileExtension='bam', indexExtension='null'}, split_reads, [RG], {.0=17, .1=2}) 0.072s passed
testSplitReadsByReadGroup[31](TypeImpl{name='BAM', fileExtension='bam', indexExtension='null'}, split_reads, [LB], {.whatever=19}) 0.069s passed
testSplitReadsByReadGroup[32](TypeImpl{name='BAM', fileExtension='bam', indexExtension='null'}, split_reads, [SM, RG], {.Momma.0=17, .Poppa.1=2}) 0.119s passed
testSplitReadsByReadGroup[33](TypeImpl{name='BAM', fileExtension='bam', indexExtension='null'}, split_reads, [SM, RG, LB], {.Momma.0.whatever=17}) 0.125s passed
testSplitReadsByReadGroup[34](TypeImpl{name='BAM', fileExtension='bam', indexExtension='null'}, split_reads_missing_lib, [LB], {.unknown=17, .whatever=2}) 0.174s passed
testSplitReadsByReadGroup[3](TypeImpl{name='CRAM', fileExtension='cram', indexExtension='crai'}, split_reads, [LB], {.whatever=19}) 0.077s passed
testSplitReadsByReadGroup[4](TypeImpl{name='CRAM', fileExtension='cram', indexExtension='crai'}, split_reads, [SM, RG], {.Momma.0=17, .Poppa.1=2}) 0.082s passed
testSplitReadsByReadGroup[5](TypeImpl{name='CRAM', fileExtension='cram', indexExtension='crai'}, split_reads, [SM, RG, LB], {.Momma.0.whatever=17}) 0.084s passed
testSplitReadsByReadGroup[6](TypeImpl{name='CRAM', fileExtension='cram', indexExtension='crai'}, split_reads_missing_lib, [LB], {.unknown=17, .whatever=2}) 0.086s passed
testSplitReadsByReadGroup[7](TypeImpl{name='BAM', fileExtension='bam', indexExtension='bai'}, split_reads, [], {=19}) 0.071s passed
testSplitReadsByReadGroup[8](TypeImpl{name='BAM', fileExtension='bam', indexExtension='bai'}, split_reads, [SM], {.Momma=17, .Poppa=2}) 0.120s passed
testSplitReadsByReadGroup[9](TypeImpl{name='BAM', fileExtension='bam', indexExtension='bai'}, split_reads, [RG], {.0=17, .1=2}) 0.125s passed

Standard error

[May 27, 2025 at 1:40:12 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 1:40:12 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 1:40:12 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 1:40:12 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 1:40:12 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 1:40:12 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 1:40:12 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 1:40:12 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 1:40:12 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 1:40:13 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 1:40:13 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 1:40:13 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 1:40:13 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 1:40:13 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 1:40:13 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 1:40:13 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 1:40:14 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 1:40:14 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 1:40:14 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 1:40:14 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 1:40:14 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 1:40:14 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 1:40:14 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 1:40:14 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 1:40:15 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 1:40:15 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 1:40:15 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 1:40:15 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 1:40:15 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 1:40:15 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 1:40:15 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 1:40:15 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 1:40:15 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 1:40:16 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 1:40:16 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000