Class org.broadinstitute.hellbender.tools.spark.sv.integration.FindBreakpointEvidenceSparkIntegrationTest

all > org.broadinstitute.hellbender.tools.spark.sv.integration > FindBreakpointEvidenceSparkIntegrationTest
2

tests
0

failures
0

ignored
7.109s

duration
100%

successful

Tests

Test Duration Result
testFindBreakpointRunnableLocal[0](FindBreakpointEvidenceSparkIntegrationTestArgs{bam-loc='/home/runner/work/gatk/gatk/src/test/resources/large//sv/SVIntegrationTest_hg19.bam', kmer-ignore-list-loc='src/test/resources/org/broadinstitute/hellbender/tools/spark/sv/integration/inputs/dummy.kill.kmers', aligner-ref-index-img-loc='/home/runner/work/gatk/gatk/src/test/resources/large/human_g1k_v37.20.21.fasta.img', output-dir='/tmp/forNew17007341670653566923', bam-coverage='10.0'}) 2.532s passed
testFindBreakpointRunnableMiniCluster[0](FindBreakpointEvidenceSparkIntegrationTestArgs{bam-loc='/home/runner/work/gatk/gatk/src/test/resources/large//sv/SVIntegrationTest_hg19.bam', kmer-ignore-list-loc='src/test/resources/org/broadinstitute/hellbender/tools/spark/sv/integration/inputs/dummy.kill.kmers', aligner-ref-index-img-loc='/home/runner/work/gatk/gatk/src/test/resources/large/human_g1k_v37.20.21.fasta.img', output-dir='/tmp/forNew4373833844140627565', bam-coverage='10.0'}) 4.577s passed

Standard error

[May 27, 2025 at 1:50:58 PM UTC] org.broadinstitute.hellbender.tools.spark.sv.evidence.FindBreakpointEvidenceSpark done. Elapsed time: 0.04 minutes.
Runtime.totalMemory()=2940207104
[May 27, 2025 at 1:51:03 PM UTC] org.broadinstitute.hellbender.tools.spark.sv.evidence.FindBreakpointEvidenceSpark done. Elapsed time: 0.05 minutes.
Runtime.totalMemory()=826277888
13:51:03.256 ERROR DataNode - Command processor encountered interrupt and exit.