Class org.broadinstitute.hellbender.tools.sv.PrintSVEvidenceIntegrationTest
|
100%
successful |
Tests
| Test | Duration | Result |
|---|---|---|
| testBafUniquenessCriterion | 0.001s | passed |
| testBafViolateUniquenessCriterion | 0.001s | passed |
| testCorrectFeatureTypes | 0.076s | passed |
| testDepthUniquenessCriterion | 0s | passed |
| testDepthViolateUniquenessCriterion | 0.001s | passed |
| testIncorrectFeatureTypes | 0.069s | passed |
| testPrintSplitReads[0](print read pairs zipped, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/sv/printevidence/test_hg38.pe.txt.gz, .pe.txt, chr22:30500000-30550001, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/sv/printevidence/output.test_hg38.pe.txt.gz) | 0.083s | passed |
| testPrintSplitReads[1](print read pairs unzipped, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/sv/printevidence/test_hg38.pe.txt.gz, .pe.txt, chr22:30500000-30550001, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/sv/printevidence/output.test_hg38.pe.txt) | 0.084s | passed |
| testPrintSplitReads[2](print split reads zipped, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/sv/printevidence/test_hg38.sr.txt.gz, .sr.txt.gz, chr22:30500000-30550001, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/sv/printevidence/output.test_hg38.sr.txt.gz) | 0.098s | passed |
| testPrintSplitReads[3](print baf zipped, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/sv/printevidence/test_hg38.baf.txt.gz, .baf.txt.gz, chr22:30500000-30550001, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/sv/printevidence/output.test_hg38.baf.txt.gz) | 0.089s | passed |
| testPrintSplitReads[4](print rd zipped, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/sv/printevidence/test_hg38.rd.txt.gz, .rd.txt.gz, chr22:30500000-30550001, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/sv/printevidence/output.test_hg38.rd.txt.gz) | 0.097s | passed |
| testPrintSplitReads[5](print rd unzipped, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/sv/printevidence/test_hg38.rd.txt.gz, .rd.txt, chr22:30500000-30550001, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/sv/printevidence/output.test_hg38.rd.txt) | 0.092s | passed |
| testSiteDepthUniquenessCriterion | 0.001s | passed |
| testSiteDepthViolateUniquenessCriterion | 0.001s | passed |
| testSplitReadUniquenessCriterion | 0s | passed |
| testSplitReadViolateUniquenessCriterion | 0.002s | passed |
Standard output
-------------------------------------------------------------------------------- [13:51:25] Executing test PrintSVEvidenceIntegrationTest:matching input and output types -------------------------------------------------------------------------------- [13:51:25] Executing test PrintSVEvidenceIntegrationTest:mismatched input and output types -------------------------------------------------------------------------------- [13:51:25] Executing test PrintSVEvidenceIntegrationTest:print read pairs zipped -------------------------------------------------------------------------------- [13:51:26] Executing test PrintSVEvidenceIntegrationTest:print read pairs unzipped -------------------------------------------------------------------------------- [13:51:26] Executing test PrintSVEvidenceIntegrationTest:print split reads zipped -------------------------------------------------------------------------------- [13:51:26] Executing test PrintSVEvidenceIntegrationTest:print baf zipped -------------------------------------------------------------------------------- [13:51:26] Executing test PrintSVEvidenceIntegrationTest:print rd zipped -------------------------------------------------------------------------------- [13:51:26] Executing test PrintSVEvidenceIntegrationTest:print rd unzipped
Standard error
[May 27, 2025 at 1:51:25 PM UTC] org.broadinstitute.hellbender.tools.sv.PrintSVEvidence done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=643825664 [May 27, 2025 at 1:51:25 PM UTC] org.broadinstitute.hellbender.tools.sv.PrintSVEvidence done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=643825664 [May 27, 2025 at 1:51:26 PM UTC] org.broadinstitute.hellbender.tools.sv.PrintSVEvidence done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=643825664 [May 27, 2025 at 1:51:26 PM UTC] org.broadinstitute.hellbender.tools.sv.PrintSVEvidence done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=643825664 [May 27, 2025 at 1:51:26 PM UTC] org.broadinstitute.hellbender.tools.sv.PrintSVEvidence done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=643825664 [May 27, 2025 at 1:51:26 PM UTC] org.broadinstitute.hellbender.tools.sv.PrintSVEvidence done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=643825664 [May 27, 2025 at 1:51:26 PM UTC] org.broadinstitute.hellbender.tools.sv.PrintSVEvidence done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=643825664 [May 27, 2025 at 1:51:26 PM UTC] org.broadinstitute.hellbender.tools.sv.PrintSVEvidence done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=643825664