Class org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounterIntegrationTest
Tests
| Test |
Duration |
Result |
| testASEReadCounterFileFormat |
0.273s |
passed |
| testASEReadCounterImproperPairs |
3.125s |
passed |
| testASEReadCounterMinDepth70 |
0.194s |
passed |
| testASEReadCounterMultipleContexts |
0.126s |
passed |
| testASEReadCounterNonRefAllele |
0.128s |
passed |
| testASEReadCounterWarnings |
0.195s |
passed |
| testASEReadCounterWithCountOverlaps |
0.191s |
passed |
| testASEReadCounterWithCountReads |
0.191s |
passed |
| testASEReadCounterWithHighMQ |
0.192s |
passed |
| testASEReadCounterWithHighMQLowBQ |
0.191s |
passed |
| testASEReadCounterWithLowMQ |
0.194s |
passed |
| testASEReadCounterWithLowMQNoDedup |
0.195s |
passed |
Standard output
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[13:57:36] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
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[13:57:36] Executing test ASEReadCounterIntegrationTest:test improper pairs
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[13:57:39] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[13:57:40] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[13:57:40] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[13:57:40] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[13:57:40] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[13:57:41] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[13:57:41] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
Standard error
[May 27, 2025 at 1:57:36 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2032140288
[May 27, 2025 at 1:57:39 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.05 minutes.
Runtime.totalMemory()=2032140288
[May 27, 2025 at 1:57:39 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2032140288
[May 27, 2025 at 1:57:39 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2032140288
[May 27, 2025 at 1:57:40 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2032140288
[May 27, 2025 at 1:57:40 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2032140288
[May 27, 2025 at 1:57:40 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2032140288
[May 27, 2025 at 1:57:40 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2032140288
[May 27, 2025 at 1:57:40 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2032140288
[May 27, 2025 at 1:57:41 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2032140288
[May 27, 2025 at 1:57:41 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2032140288
[May 27, 2025 at 1:57:41 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2032140288