Class org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReadsIntegrationTest
Tests
| Test |
Duration |
Result |
| testLargeFileThatForcesSnappyUsage |
11.452s |
passed |
| testSplitsFixNDN |
0.080s |
passed |
| testSplitsOfUnpairedAndUnmappedReads |
1.516s |
passed |
| testSplitsTargetRegionFunctionality |
0.210s |
passed |
| testSplitsWithOverhangs |
0.447s |
passed |
| testSplitsWithOverhangs0Mismatches |
0.353s |
passed |
| testSplitsWithOverhangs5BasesInOverhang |
0.365s |
passed |
| testSplitsWithOverhangsNotClipping |
0.360s |
passed |
| testSplitsWithoutSecondaryAlignments |
0.437s |
passed |
Standard output
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[13:58:07] Executing test SplitNCigarReadsIntegrationTest:test fix NDN
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[13:58:07] Executing test SplitNCigarReadsIntegrationTest:regression test for unmapped and unpaired reads
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[13:58:09] Executing test SplitNCigarReadsIntegrationTest:regression test for unmapped and unpaired reads
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[13:58:09] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs
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[13:58:09] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs 0 mismatches
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[13:58:10] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs 5 bases in overhang
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[13:58:10] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs not clipping
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[13:58:10] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs
Standard error
[May 27, 2025 at 1:58:07 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.19 minutes.
Runtime.totalMemory()=553648128
[May 27, 2025 at 1:58:07 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=553648128
[May 27, 2025 at 1:58:09 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=545259520
[May 27, 2025 at 1:58:09 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=545259520
[May 27, 2025 at 1:58:09 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=545259520
[May 27, 2025 at 1:58:10 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=545259520
[May 27, 2025 at 1:58:10 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=545259520
[May 27, 2025 at 1:58:10 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=545259520
[May 27, 2025 at 1:58:11 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=545259520