Class org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest

all > org.broadinstitute.hellbender.engine > MultiVariantWalkerIntegrationTest
tests
failures
ignored
0.340s
duration
100%
successful
Tests
Standard error
Tests

Test	Duration	Result
testDuplicateSources	0.019s	passed
testGetCompatibleHeader	0.029s	passed
testGetConflictingHeader	0.029s	passed
testIteratorOverlapping	0.025s	passed
testNoDictionaryForAllInputs	0.023s	passed
testNoDictionaryForOneInput	0.020s	passed
testNoDictionaryForOnlyInput	0.018s	passed
testVariantOrder[0]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf], null, 26)	0.022s	passed
testVariantOrder[1]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf], null, 13)	0.019s	passed
testVariantOrder[2]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf], null, 26)	0.020s	passed
testVariantOrder[3]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_1.vcf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_2.vcf], null, 26)	0.029s	passed
testVariantOrder[4]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf], 1, 14)	0.025s	passed
testVariantOrder[5]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf], 1, 7)	0.024s	passed
testVariantOrder[6]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf], 1, 14)	0.020s	passed
testVariantOrder[7]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf], 2:200-600, 3)	0.018s	passed
testVariantsFromBundleOrder	-	ignored
Standard error

14:58:48.988 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:58:48.988 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g93cf621-SNAPSHOT
14:58:48.988 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:58:48.988 INFO  TestMultiVariantWalker - Executing as root@07a40c7a9995 on Linux v6.11.0-1014-azure amd64
14:58:48.989 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
14:58:48.989 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 2:58:48 PM GMT
14:58:48.989 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:58:48.989 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:58:48.989 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:58:48.989 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:58:48.989 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:58:48.989 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:58:48.989 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:58:48.989 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:58:48.989 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:58:48.989 INFO  TestMultiVariantWalker - Requester pays: disabled
14:58:48.989 INFO  TestMultiVariantWalker - Initializing engine
14:58:48.991 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
14:58:48.992 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 2:58:48 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
14:58:49.007 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:58:49.008 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g93cf621-SNAPSHOT
14:58:49.008 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:58:49.008 INFO  TestMultiVariantWalker - Executing as root@07a40c7a9995 on Linux v6.11.0-1014-azure amd64
14:58:49.008 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
14:58:49.008 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 2:58:49 PM GMT
14:58:49.008 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:58:49.008 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:58:49.008 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:58:49.008 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:58:49.008 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:58:49.008 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:58:49.008 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:58:49.008 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:58:49.008 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:58:49.009 INFO  TestMultiVariantWalker - Requester pays: disabled
14:58:49.009 INFO  TestMultiVariantWalker - Initializing engine
14:58:49.010 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
14:58:49.012 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
14:58:49.017 INFO  TestMultiVariantWalker - Done initializing engine
14:58:49.017 INFO  ProgressMeter - Starting traversal
14:58:49.017 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:58:49.020 INFO  ProgressMeter -             unmapped              0.0                    26         520000.0
14:58:49.020 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
14:58:49.020 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 2:58:49 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
14:58:49.046 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:58:49.046 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g93cf621-SNAPSHOT
14:58:49.046 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:58:49.046 INFO  TestMultiVariantWalker - Executing as root@07a40c7a9995 on Linux v6.11.0-1014-azure amd64
14:58:49.046 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
14:58:49.046 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 2:58:49 PM GMT
14:58:49.046 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:58:49.046 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:58:49.046 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:58:49.046 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:58:49.046 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:58:49.046 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:58:49.046 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:58:49.046 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:58:49.046 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:58:49.047 INFO  TestMultiVariantWalker - Requester pays: disabled
14:58:49.047 INFO  TestMultiVariantWalker - Initializing engine
14:58:49.048 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
14:58:49.049 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariantsConflictingDictionary.vcf
14:58:49.050 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 2:58:49 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
14:58:49.068 INFO  TestMultiVariantWalkerIterator - ------------------------------------------------------------
14:58:49.068 INFO  TestMultiVariantWalkerIterator - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g93cf621-SNAPSHOT
14:58:49.068 INFO  TestMultiVariantWalkerIterator - For support and documentation go to https://software.broadinstitute.org/gatk/
14:58:49.068 INFO  TestMultiVariantWalkerIterator - Executing as root@07a40c7a9995 on Linux v6.11.0-1014-azure amd64
14:58:49.069 INFO  TestMultiVariantWalkerIterator - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
14:58:49.069 INFO  TestMultiVariantWalkerIterator - Start Date/Time: May 27, 2025 at 2:58:49 PM GMT
14:58:49.069 INFO  TestMultiVariantWalkerIterator - ------------------------------------------------------------
14:58:49.069 INFO  TestMultiVariantWalkerIterator - ------------------------------------------------------------
14:58:49.069 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:58:49.069 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:58:49.069 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:58:49.069 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:58:49.069 INFO  TestMultiVariantWalkerIterator - Deflater: IntelDeflater
14:58:49.069 INFO  TestMultiVariantWalkerIterator - Inflater: IntelInflater
14:58:49.069 INFO  TestMultiVariantWalkerIterator - GCS max retries/reopens: 20
14:58:49.069 INFO  TestMultiVariantWalkerIterator - Requester pays: disabled
14:58:49.069 INFO  TestMultiVariantWalkerIterator - Initializing engine
14:58:49.071 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_WithOverlap.vcf
14:58:49.072 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_WithOverlap.vcf
14:58:49.074 INFO  TestMultiVariantWalkerIterator - Done initializing engine
14:58:49.074 INFO  ProgressMeter - Starting traversal
14:58:49.075 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:58:49.076 INFO  ProgressMeter -             unmapped              0.0                    28        1680000.0
14:58:49.076 INFO  ProgressMeter - Traversal complete. Processed 28 total variants in 0.0 minutes.
14:58:49.076 INFO  TestMultiVariantWalkerIterator - Shutting down engine
[May 27, 2025 at 2:58:49 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalkerIterator done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
14:58:49.092 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:58:49.092 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g93cf621-SNAPSHOT
14:58:49.092 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:58:49.092 INFO  TestMultiVariantWalker - Executing as root@07a40c7a9995 on Linux v6.11.0-1014-azure amd64
14:58:49.092 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
14:58:49.092 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 2:58:49 PM GMT
14:58:49.092 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:58:49.092 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:58:49.092 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:58:49.092 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:58:49.092 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:58:49.092 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:58:49.092 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:58:49.092 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:58:49.093 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:58:49.093 INFO  TestMultiVariantWalker - Requester pays: disabled
14:58:49.093 INFO  TestMultiVariantWalker - Initializing engine
14:58:49.095 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf
14:58:49.096 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf
14:58:49.098 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf. The input may not exist or may not have a valid header
14:58:49.098 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf. The input may not exist or may not have a valid header
14:58:49.098 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 2:58:49 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
14:58:49.113 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:58:49.113 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g93cf621-SNAPSHOT
14:58:49.113 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:58:49.113 INFO  TestMultiVariantWalker - Executing as root@07a40c7a9995 on Linux v6.11.0-1014-azure amd64
14:58:49.113 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
14:58:49.113 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 2:58:49 PM GMT
14:58:49.113 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:58:49.113 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:58:49.113 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:58:49.114 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:58:49.114 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:58:49.114 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:58:49.114 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:58:49.114 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:58:49.114 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:58:49.114 INFO  TestMultiVariantWalker - Requester pays: disabled
14:58:49.114 INFO  TestMultiVariantWalker - Initializing engine
14:58:49.115 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
14:58:49.116 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf
14:58:49.117 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf. The input may not exist or may not have a valid header
14:58:49.117 INFO  TestMultiVariantWalker - Done initializing engine
14:58:49.117 INFO  ProgressMeter - Starting traversal
14:58:49.117 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:58:49.119 INFO  ProgressMeter -             unmapped              0.0                    26         780000.0
14:58:49.119 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
14:58:49.119 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 2:58:49 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
14:58:49.134 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:58:49.134 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g93cf621-SNAPSHOT
14:58:49.134 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:58:49.134 INFO  TestMultiVariantWalker - Executing as root@07a40c7a9995 on Linux v6.11.0-1014-azure amd64
14:58:49.134 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
14:58:49.134 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 2:58:49 PM GMT
14:58:49.134 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:58:49.134 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:58:49.134 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:58:49.134 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:58:49.134 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:58:49.134 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:58:49.134 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:58:49.134 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:58:49.134 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:58:49.134 INFO  TestMultiVariantWalker - Requester pays: disabled
14:58:49.135 INFO  TestMultiVariantWalker - Initializing engine
14:58:49.136 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf
14:58:49.136 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf. The input may not exist or may not have a valid header
14:58:49.137 INFO  TestMultiVariantWalker - Done initializing engine
14:58:49.137 INFO  ProgressMeter - Starting traversal
14:58:49.137 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:58:49.137 INFO  ProgressMeter -             unmapped              0.0                    13         Infinity
14:58:49.137 INFO  ProgressMeter - Traversal complete. Processed 13 total variants in 0.0 minutes.
14:58:49.137 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 2:58:49 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
14:58:49.156 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:58:49.156 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g93cf621-SNAPSHOT
14:58:49.156 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:58:49.156 INFO  TestMultiVariantWalker - Executing as root@07a40c7a9995 on Linux v6.11.0-1014-azure amd64
14:58:49.156 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
14:58:49.156 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 2:58:49 PM GMT
14:58:49.156 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:58:49.156 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:58:49.156 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:58:49.156 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:58:49.156 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:58:49.156 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:58:49.157 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:58:49.157 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:58:49.157 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:58:49.157 INFO  TestMultiVariantWalker - Requester pays: disabled
14:58:49.157 INFO  TestMultiVariantWalker - Initializing engine
14:58:49.158 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
14:58:49.158 INFO  TestMultiVariantWalker - Done initializing engine
14:58:49.158 INFO  ProgressMeter - Starting traversal
14:58:49.159 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:58:49.160 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
14:58:49.160 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
14:58:49.160 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 2:58:49 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
14:58:49.175 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:58:49.175 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g93cf621-SNAPSHOT
14:58:49.175 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:58:49.175 INFO  TestMultiVariantWalker - Executing as root@07a40c7a9995 on Linux v6.11.0-1014-azure amd64
14:58:49.175 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
14:58:49.175 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 2:58:49 PM GMT
14:58:49.175 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:58:49.175 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:58:49.175 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:58:49.176 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:58:49.176 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:58:49.176 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:58:49.176 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:58:49.176 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:58:49.176 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:58:49.176 INFO  TestMultiVariantWalker - Requester pays: disabled
14:58:49.176 INFO  TestMultiVariantWalker - Initializing engine
14:58:49.177 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
14:58:49.178 INFO  TestMultiVariantWalker - Done initializing engine
14:58:49.178 INFO  ProgressMeter - Starting traversal
14:58:49.178 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:58:49.179 INFO  ProgressMeter -             unmapped              0.0                    13         780000.0
14:58:49.179 INFO  ProgressMeter - Traversal complete. Processed 13 total variants in 0.0 minutes.
14:58:49.179 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 2:58:49 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
14:58:49.193 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:58:49.193 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g93cf621-SNAPSHOT
14:58:49.193 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:58:49.193 INFO  TestMultiVariantWalker - Executing as root@07a40c7a9995 on Linux v6.11.0-1014-azure amd64
14:58:49.194 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
14:58:49.194 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 2:58:49 PM GMT
14:58:49.194 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:58:49.194 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:58:49.194 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:58:49.194 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:58:49.194 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:58:49.194 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:58:49.194 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:58:49.194 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:58:49.194 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:58:49.194 INFO  TestMultiVariantWalker - Requester pays: disabled
14:58:49.194 INFO  TestMultiVariantWalker - Initializing engine
14:58:49.195 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
14:58:49.196 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
14:58:49.198 INFO  TestMultiVariantWalker - Done initializing engine
14:58:49.198 INFO  ProgressMeter - Starting traversal
14:58:49.198 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:58:49.199 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
14:58:49.199 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
14:58:49.199 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 2:58:49 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
14:58:49.222 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:58:49.222 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g93cf621-SNAPSHOT
14:58:49.222 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:58:49.222 INFO  TestMultiVariantWalker - Executing as root@07a40c7a9995 on Linux v6.11.0-1014-azure amd64
14:58:49.222 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
14:58:49.222 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 2:58:49 PM GMT
14:58:49.222 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:58:49.222 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:58:49.222 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:58:49.222 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:58:49.222 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:58:49.222 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:58:49.222 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:58:49.222 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:58:49.222 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:58:49.222 INFO  TestMultiVariantWalker - Requester pays: disabled
14:58:49.222 INFO  TestMultiVariantWalker - Initializing engine
14:58:49.224 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_1.vcf
14:58:49.226 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_2.vcf
14:58:49.228 INFO  TestMultiVariantWalker - Done initializing engine
14:58:49.228 INFO  ProgressMeter - Starting traversal
14:58:49.228 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:58:49.229 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
14:58:49.229 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
14:58:49.229 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 2:58:49 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
14:58:49.250 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:58:49.250 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g93cf621-SNAPSHOT
14:58:49.250 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:58:49.250 INFO  TestMultiVariantWalker - Executing as root@07a40c7a9995 on Linux v6.11.0-1014-azure amd64
14:58:49.250 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
14:58:49.250 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 2:58:49 PM GMT
14:58:49.251 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:58:49.251 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:58:49.251 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:58:49.251 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:58:49.251 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:58:49.251 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:58:49.251 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:58:49.251 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:58:49.251 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:58:49.251 INFO  TestMultiVariantWalker - Requester pays: disabled
14:58:49.251 INFO  TestMultiVariantWalker - Initializing engine
14:58:49.252 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
14:58:49.254 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
14:58:49.254 INFO  TestMultiVariantWalker - Done initializing engine
14:58:49.254 INFO  ProgressMeter - Starting traversal
14:58:49.254 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:58:49.255 INFO  ProgressMeter -             unmapped              0.0                    14         840000.0
14:58:49.255 INFO  ProgressMeter - Traversal complete. Processed 14 total variants in 0.0 minutes.
14:58:49.255 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 2:58:49 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
14:58:49.275 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:58:49.276 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g93cf621-SNAPSHOT
14:58:49.276 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:58:49.276 INFO  TestMultiVariantWalker - Executing as root@07a40c7a9995 on Linux v6.11.0-1014-azure amd64
14:58:49.276 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
14:58:49.276 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 2:58:49 PM GMT
14:58:49.276 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:58:49.276 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:58:49.276 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:58:49.276 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:58:49.276 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:58:49.276 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:58:49.276 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:58:49.276 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:58:49.276 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:58:49.276 INFO  TestMultiVariantWalker - Requester pays: disabled
14:58:49.276 INFO  TestMultiVariantWalker - Initializing engine
14:58:49.277 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
14:58:49.278 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
14:58:49.278 INFO  TestMultiVariantWalker - Done initializing engine
14:58:49.278 INFO  ProgressMeter - Starting traversal
14:58:49.278 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:58:49.279 INFO  ProgressMeter -             unmapped              0.0                     7         420000.0
14:58:49.279 INFO  ProgressMeter - Traversal complete. Processed 7 total variants in 0.0 minutes.
14:58:49.279 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 2:58:49 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
14:58:49.293 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:58:49.293 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g93cf621-SNAPSHOT
14:58:49.293 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:58:49.293 INFO  TestMultiVariantWalker - Executing as root@07a40c7a9995 on Linux v6.11.0-1014-azure amd64
14:58:49.293 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
14:58:49.293 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 2:58:49 PM GMT
14:58:49.293 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:58:49.293 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:58:49.293 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:58:49.293 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:58:49.293 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:58:49.293 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:58:49.293 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:58:49.293 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:58:49.293 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:58:49.293 INFO  TestMultiVariantWalker - Requester pays: disabled
14:58:49.293 INFO  TestMultiVariantWalker - Initializing engine
14:58:49.295 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
14:58:49.296 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
14:58:49.298 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
14:58:49.298 INFO  TestMultiVariantWalker - Done initializing engine
14:58:49.298 INFO  ProgressMeter - Starting traversal
14:58:49.298 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:58:49.299 INFO  ProgressMeter -             unmapped              0.0                    14         840000.0
14:58:49.299 INFO  ProgressMeter - Traversal complete. Processed 14 total variants in 0.0 minutes.
14:58:49.299 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 2:58:49 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
14:58:49.312 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:58:49.312 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g93cf621-SNAPSHOT
14:58:49.313 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:58:49.313 INFO  TestMultiVariantWalker - Executing as root@07a40c7a9995 on Linux v6.11.0-1014-azure amd64
14:58:49.313 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
14:58:49.313 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 2:58:49 PM GMT
14:58:49.313 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:58:49.313 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:58:49.313 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:58:49.313 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:58:49.313 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:58:49.313 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:58:49.313 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:58:49.313 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:58:49.313 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:58:49.313 INFO  TestMultiVariantWalker - Requester pays: disabled
14:58:49.313 INFO  TestMultiVariantWalker - Initializing engine
14:58:49.314 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
14:58:49.315 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
14:58:49.316 INFO  IntervalArgumentCollection - Processing 401 bp from intervals
14:58:49.316 INFO  TestMultiVariantWalker - Done initializing engine
14:58:49.317 INFO  ProgressMeter - Starting traversal
14:58:49.317 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:58:49.317 INFO  ProgressMeter -             unmapped              0.0                     3         Infinity
14:58:49.317 INFO  ProgressMeter - Traversal complete. Processed 3 total variants in 0.0 minutes.
14:58:49.317 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 2:58:49 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000