Class org.broadinstitute.hellbender.tools.IndexFeatureFileIntegrationTest
Tests
| Test |
Duration |
Result |
| testBCFIndex |
0.081s |
passed |
| testBedGZIndex |
0.088s |
passed |
| testBedIndex |
0.078s |
passed |
| testCompressedBCF2_2Index |
0.078s |
passed |
| testEnsemblGtfIndex |
0.323s |
passed |
| testEnsemblGtfIndexQuery[0](Chromosome:3019160-3020500, 1, [Lorg.broadinstitute.hellbender.utils.SimpleInterval;@4b34e3d8, [Ljava.lang.String;@dc460e9, [Ljava.lang.String;@6d8a53a2) |
0.004s |
passed |
| testEnsemblGtfIndexQuery[1](Chromosome:3286269-3288786, 4, [Lorg.broadinstitute.hellbender.utils.SimpleInterval;@64ea9b8c, [Ljava.lang.String;@591027b, [Ljava.lang.String;@2550a63c) |
0.003s |
passed |
| testGVCFIndex |
0.127s |
passed |
| testGVCFTreatedAsVCFIndex |
0.115s |
passed |
| testIndexBCFFileGZ |
0.082s |
passed |
| testIndexNonFeatureFileGZ |
0.076s |
passed |
| testNewGencodeLiftoverGtfFile |
0.083s |
passed |
| testSAMPileupGZIndex |
0.095s |
passed |
| testUncompressedBCF2_2Index |
0.097s |
passed |
| testVCFGZIPIndex |
0.081s |
passed |
| testVCFGZIPIndex_inferredName |
0.083s |
passed |
| testVCFGZIndex_inferredName |
0.076s |
passed |
| testVCFGZIndex_tabix |
0.103s |
passed |
| testVCFGZIndex_tabixRequires_tbi_name |
0.078s |
passed |
| testVCFGZLargeHeaderIndex_tabix |
0.116s |
passed |
| testVCFIndex |
0.106s |
passed |
| testVCFIndex_cannotWrite |
0.087s |
passed |
| testVCFIndex_inferredName |
0.078s |
passed |
| testVCFIndex_missingFile |
0.072s |
passed |
| testVCFWithNoRecords |
0.074s |
passed |
Standard error
[May 27, 2025 at 3:01:42 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=750780416
[May 27, 2025 at 3:01:42 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=750780416
[May 27, 2025 at 3:01:42 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=750780416
[May 27, 2025 at 3:01:42 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=750780416
[May 27, 2025 at 3:01:42 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=750780416
[May 27, 2025 at 3:01:42 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=750780416
[May 27, 2025 at 3:01:42 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=750780416
[May 27, 2025 at 3:01:42 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=750780416
[May 27, 2025 at 3:01:42 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=750780416
[May 27, 2025 at 3:01:43 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=750780416
[May 27, 2025 at 3:01:43 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=750780416
[May 27, 2025 at 3:01:43 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=750780416
[May 27, 2025 at 3:01:43 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=750780416
[May 27, 2025 at 3:01:43 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=750780416
[May 27, 2025 at 3:01:43 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=750780416
[May 27, 2025 at 3:01:43 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=750780416
[May 27, 2025 at 3:01:43 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=750780416
[May 27, 2025 at 3:01:43 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=750780416
[May 27, 2025 at 3:01:43 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=750780416
[May 27, 2025 at 3:01:43 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=750780416
[May 27, 2025 at 3:01:44 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=750780416
[May 27, 2025 at 3:01:44 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=750780416
[May 27, 2025 at 3:01:44 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=750780416