Class org.broadinstitute.hellbender.tools.spark.pipelines.CountBasesSparkIntegrationTest
Tests
| Test |
Duration |
Result |
| countBases[0](count_bases.sam, null, 808) |
0.125s |
passed |
| countBases[1](count_bases.bam, null, 808) |
0.301s |
passed |
| countBases[2](count_bases.cram, count_bases.fasta, 808) |
0.244s |
passed |
| testIntervals[0](chr8:1-2147483647, 0) |
0.203s |
passed |
| testIntervals[1](chr7:1-2147483647, 707) |
0.200s |
passed |
| testIntervals[2](chr7:1-2, 303) |
0.199s |
passed |
| testNoNPRWhenOutputIsUnspecified |
0.285s |
passed |
Standard output
808
808
808
0
707
303
808
Standard error
[May 27, 2025 at 3:11:46 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountBasesSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1480589312
[May 27, 2025 at 3:11:46 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountBasesSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1480589312
[May 27, 2025 at 3:11:46 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountBasesSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1480589312
[May 27, 2025 at 3:11:46 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountBasesSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1480589312
[May 27, 2025 at 3:11:46 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountBasesSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1480589312
[May 27, 2025 at 3:11:47 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountBasesSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1480589312
[May 27, 2025 at 3:11:47 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountBasesSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1480589312