Class org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSparkIntegrationTest

all > org.broadinstitute.hellbender.tools.spark.pipelines > CountVariantsSparkIntegrationTest
16

tests
0

failures
0

ignored
5.462s

duration
100%

successful

Tests

Test Duration Result
testCountVariantsWithIntervals[0](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf, , 9594) 0.245s passed
testCountVariantsWithIntervals[10](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -L 20 -L 21, 9594) 0.256s passed
testCountVariantsWithIntervals[11](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -XL 20, 3937) 0.243s passed
testCountVariantsWithIntervals[1](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -L 20, 5657) 0.244s passed
testCountVariantsWithIntervals[2](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -L 20:10200000-11000000, 933) 0.239s passed
testCountVariantsWithIntervals[3](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -L 21, 3937) 0.233s passed
testCountVariantsWithIntervals[4](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -L 20 -L 21, 9594) 0.253s passed
testCountVariantsWithIntervals[5](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -XL 20, 3937) 0.242s passed
testCountVariantsWithIntervals[6](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, , 9594) 0.258s passed
testCountVariantsWithIntervals[7](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -L 20, 5657) 0.237s passed
testCountVariantsWithIntervals[8](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -L 20:10200000-11000000, 933) 0.230s passed
testCountVariantsWithIntervals[9](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -L 21, 3937) 0.242s passed
testNoNPRWhenOutputIsUnspecified 0.087s passed
test[0](src/test/resources/org/broadinstitute/hellbender/tools/count_variants.vcf, 26) 0.098s passed
test[1](src/test/resources/org/broadinstitute/hellbender/tools/count_variants.blockgz.gz, 26) 0.092s passed
test[2](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.1.1-65M.vcf, 1375319) 2.263s passed

Standard output

26
26
1375319
9594
9594
5657
5657
933
933
3937
3937
9594
9594
3937
3937
9594
9594
5657
5657
933
933
3937
3937
9594
9594
3937
3937
26

Standard error

[May 27, 2025 at 3:11:51 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1480589312
[May 27, 2025 at 3:11:51 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1480589312
[May 27, 2025 at 3:11:53 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.04 minutes.
Runtime.totalMemory()=1480589312
[May 27, 2025 at 3:11:53 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1480589312
[May 27, 2025 at 3:11:54 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1480589312
[May 27, 2025 at 3:11:54 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1480589312
[May 27, 2025 at 3:11:54 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1480589312
[May 27, 2025 at 3:11:54 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1480589312
[May 27, 2025 at 3:11:55 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1480589312
[May 27, 2025 at 3:11:55 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1480589312
[May 27, 2025 at 3:11:55 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1480589312
[May 27, 2025 at 3:11:55 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1480589312
[May 27, 2025 at 3:11:56 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1480589312
[May 27, 2025 at 3:11:56 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1480589312
[May 27, 2025 at 3:11:56 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1480589312
[May 27, 2025 at 3:11:56 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1480589312