Class org.broadinstitute.hellbender.tools.walkers.readorientation.LearnReadOrientationModelIntegrationTest
Tests
| Test |
Duration |
Result |
| testFewSites |
1.323s |
passed |
| testOnRealBam[0](1) |
17.677s |
passed |
| testOnRealBam[1](5) |
18.178s |
passed |
| testTwoSamples |
0.307s |
passed |
Standard error
[May 27, 2025 at 3:19:38 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2013265920
[May 27, 2025 at 3:19:38 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.LearnReadOrientationModel done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2013265920
[May 27, 2025 at 3:19:39 PM GMT] org.broadinstitute.hellbender.tools.walkers.mutect.Mutect2 done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2013265920
[May 27, 2025 at 3:19:39 PM GMT] org.broadinstitute.hellbender.tools.walkers.mutect.filtering.FilterMutectCalls done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2013265920
[May 27, 2025 at 3:19:39 PM GMT] org.broadinstitute.hellbender.tools.walkers.SplitIntervals done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2013265920
[May 27, 2025 at 3:19:40 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2013265920
[May 27, 2025 at 3:19:41 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.LearnReadOrientationModel done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=2013265920
[May 27, 2025 at 3:19:57 PM GMT] org.broadinstitute.hellbender.tools.walkers.mutect.Mutect2 done. Elapsed time: 0.27 minutes.
Runtime.totalMemory()=2013265920
[May 27, 2025 at 3:19:57 PM GMT] org.broadinstitute.hellbender.tools.walkers.mutect.filtering.FilterMutectCalls done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2013265920
[May 27, 2025 at 3:19:57 PM GMT] org.broadinstitute.hellbender.tools.walkers.SplitIntervals done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2013265920
[May 27, 2025 at 3:19:57 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2013265920
[May 27, 2025 at 3:19:57 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2013265920
[May 27, 2025 at 3:19:58 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2013265920
[May 27, 2025 at 3:19:58 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2013265920
[May 27, 2025 at 3:19:58 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2013265920
[May 27, 2025 at 3:19:59 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.LearnReadOrientationModel done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=2013265920
[May 27, 2025 at 3:20:15 PM GMT] org.broadinstitute.hellbender.tools.walkers.mutect.Mutect2 done. Elapsed time: 0.26 minutes.
Runtime.totalMemory()=2013265920
[May 27, 2025 at 3:20:15 PM GMT] org.broadinstitute.hellbender.tools.walkers.mutect.filtering.FilterMutectCalls done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2013265920
[May 27, 2025 at 3:20:15 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2013265920
[May 27, 2025 at 3:20:16 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.LearnReadOrientationModel done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2013265920