Class org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounterIntegrationTest
Tests
| Test |
Duration |
Result |
| testASEReadCounterFileFormat |
0.271s |
passed |
| testASEReadCounterImproperPairs |
3.038s |
passed |
| testASEReadCounterMinDepth70 |
0.200s |
passed |
| testASEReadCounterMultipleContexts |
0.137s |
passed |
| testASEReadCounterNonRefAllele |
0.146s |
passed |
| testASEReadCounterWarnings |
0.212s |
passed |
| testASEReadCounterWithCountOverlaps |
0.195s |
passed |
| testASEReadCounterWithCountReads |
0.197s |
passed |
| testASEReadCounterWithHighMQ |
0.195s |
passed |
| testASEReadCounterWithHighMQLowBQ |
0.195s |
passed |
| testASEReadCounterWithLowMQ |
0.201s |
passed |
| testASEReadCounterWithLowMQNoDedup |
0.203s |
passed |
Standard output
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[15:20:18] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
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[15:20:18] Executing test ASEReadCounterIntegrationTest:test improper pairs
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[15:20:21] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[15:20:22] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[15:20:22] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[15:20:22] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[15:20:22] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[15:20:23] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[15:20:23] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
Standard error
[May 27, 2025 at 3:20:18 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2013265920
[May 27, 2025 at 3:20:21 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.05 minutes.
Runtime.totalMemory()=2013265920
[May 27, 2025 at 3:20:21 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2013265920
[May 27, 2025 at 3:20:21 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2013265920
[May 27, 2025 at 3:20:22 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2013265920
[May 27, 2025 at 3:20:22 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2013265920
[May 27, 2025 at 3:20:22 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2013265920
[May 27, 2025 at 3:20:22 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2013265920
[May 27, 2025 at 3:20:22 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2013265920
[May 27, 2025 at 3:20:23 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2013265920
[May 27, 2025 at 3:20:23 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2013265920
[May 27, 2025 at 3:20:23 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2013265920