Class org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReadsIntegrationTest
Tests
| Test |
Duration |
Result |
| testLargeFileThatForcesSnappyUsage |
11.685s |
passed |
| testSplitsFixNDN |
0.115s |
passed |
| testSplitsOfUnpairedAndUnmappedReads |
1.614s |
passed |
| testSplitsTargetRegionFunctionality |
0.213s |
passed |
| testSplitsWithOverhangs |
0.489s |
passed |
| testSplitsWithOverhangs0Mismatches |
0.381s |
passed |
| testSplitsWithOverhangs5BasesInOverhang |
0.315s |
passed |
| testSplitsWithOverhangsNotClipping |
0.368s |
passed |
| testSplitsWithoutSecondaryAlignments |
0.429s |
passed |
Standard output
--------------------------------------------------------------------------------
[15:20:50] Executing test SplitNCigarReadsIntegrationTest:test fix NDN
--------------------------------------------------------------------------------
[15:20:50] Executing test SplitNCigarReadsIntegrationTest:regression test for unmapped and unpaired reads
--------------------------------------------------------------------------------
[15:20:51] Executing test SplitNCigarReadsIntegrationTest:regression test for unmapped and unpaired reads
--------------------------------------------------------------------------------
[15:20:52] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs
--------------------------------------------------------------------------------
[15:20:52] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs 0 mismatches
--------------------------------------------------------------------------------
[15:20:52] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs 5 bases in overhang
--------------------------------------------------------------------------------
[15:20:53] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs not clipping
--------------------------------------------------------------------------------
[15:20:53] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs
Standard error
[May 27, 2025 at 3:20:50 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.19 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 3:20:50 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 3:20:51 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 3:20:52 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 3:20:52 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 3:20:52 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 3:20:53 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=700448768
[May 27, 2025 at 3:20:53 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=616562688
[May 27, 2025 at 3:20:53 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=616562688