Class org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTableIntegrationTest
Tests
| Test |
Duration |
Result |
| testComplexVariantsToTable |
0.092s |
passed |
| testComplexVariantsToTableFail |
0.084s |
passed |
| testGenotypeFields |
0.088s |
passed |
| testGenotypeFieldsWithInline |
0.088s |
passed |
| testInputFileFail |
0.081s |
passed |
| testListFields |
0.085s |
passed |
| testMoltenOutput |
0.083s |
passed |
| testMoltenOutputWithGenotypeFields |
0.087s |
passed |
| testMoltenOutputWithMultipleAlleles |
0.093s |
passed |
| testMultiAllelicOneRecord |
0.086s |
passed |
| testMultiAllelicSplitRecords |
0.090s |
passed |
| testMultiallelicGenotypeFields |
0.087s |
passed |
| testNoFieldsSpecifiedFormatFieldInHeaderNoSamples |
0.091s |
passed |
| testNoFieldsSpecifiedNoSamples |
0.087s |
passed |
| testNoFieldsSpecifiedWithSamples |
0.088s |
passed |
| testNoSamples |
0.087s |
passed |
| testNoSamplesSoNoGenotypes |
0.085s |
passed |
| testOutputFileFail |
0.083s |
passed |
| testSplitMultiallelicFields |
0.267s |
passed |
| testUnfilteredGenotypeFields |
0.090s |
passed |
| testUnfilteredGenotypeFieldsFail |
0.086s |
passed |
Standard output
--------------------------------------------------------------------------------
[15:22:56] Executing test VariantsToTableIntegrationTest:testComplexVariantsToTable
--------------------------------------------------------------------------------
[15:22:56] Executing test VariantsToTableIntegrationTest:testComplexVariantsToTable-FAIL
--------------------------------------------------------------------------------
[15:22:56] Executing test VariantsToTableIntegrationTest:testGenotypeFields
--------------------------------------------------------------------------------
[15:22:56] Executing test VariantsToTableIntegrationTest:testGenotypeFieldsWithInline
--------------------------------------------------------------------------------
[15:22:57] Executing test VariantsToTableIntegrationTest:testComplexVariantsToTable-FAIL
--------------------------------------------------------------------------------
[15:22:57] Executing test VariantsToTableIntegrationTest:testGenotypeFields
--------------------------------------------------------------------------------
[15:22:57] Executing test VariantsToTableIntegrationTest:testMoltenOutput
--------------------------------------------------------------------------------
[15:22:57] Executing test VariantsToTableIntegrationTest:testMoltenOutputWithGenotypeFields
--------------------------------------------------------------------------------
[15:22:57] Executing test VariantsToTableIntegrationTest:testMoltenOutputWithMultipleAlleles
--------------------------------------------------------------------------------
[15:22:57] Executing test VariantsToTableIntegrationTest:testMultiAllelicOneRecord
--------------------------------------------------------------------------------
[15:22:57] Executing test VariantsToTableIntegrationTest:testMultiAllelicSplitRecords
--------------------------------------------------------------------------------
[15:22:57] Executing test VariantsToTableIntegrationTest:testMultiallelicGenotypeFields
--------------------------------------------------------------------------------
[15:22:57] Executing test VariantsToTableIntegrationTest:testNoSamples
--------------------------------------------------------------------------------
[15:22:58] Executing test VariantsToTableIntegrationTest:testNoSamples
--------------------------------------------------------------------------------
[15:22:58] Executing test VariantsToTableIntegrationTest:testComplexVariantsToTable-FAIL
--------------------------------------------------------------------------------
[15:22:58] Executing test VariantsToTableIntegrationTest:testGenotypeFieldsWithInline
--------------------------------------------------------------------------------
[15:22:58] Executing test VariantsToTableIntegrationTest:testGenotypeFieldsWithInline
--------------------------------------------------------------------------------
[15:22:58] Executing test VariantsToTableIntegrationTest:testGenotypeFieldsWithInline
--------------------------------------------------------------------------------
[15:22:58] Executing test VariantsToTableIntegrationTest:testUnfilteredGenotypeFields
--------------------------------------------------------------------------------
[15:22:58] Executing test VariantsToTableIntegrationTest:testUnfilteredGenotypeFields-FAIL
Standard error
[May 27, 2025 at 3:22:56 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 3:22:56 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 3:22:56 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 3:22:57 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 3:22:57 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 3:22:57 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 3:22:57 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 3:22:57 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 3:22:57 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 3:22:57 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 3:22:57 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 3:22:57 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 3:22:57 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 3:22:57 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 3:22:57 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 3:22:58 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 3:22:58 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 3:22:58 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 3:22:58 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 3:22:58 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 3:22:58 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 3:22:58 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 3:22:58 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000