Class org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest

all > org.broadinstitute.hellbender.engine > MultiVariantWalkerIntegrationTest
tests
failures
ignored
9.582s
duration
100%
successful
Tests
Standard error
Tests

Test	Duration	Result
testDuplicateSources	0.009s	passed
testGetCompatibleHeader	0.015s	passed
testGetConflictingHeader	0.008s	passed
testIteratorOverlapping	0.012s	passed
testNoDictionaryForAllInputs	0.010s	passed
testNoDictionaryForOneInput	0.009s	passed
testNoDictionaryForOnlyInput	0.006s	passed
testVariantOrder[0]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf], null, 26)	0.007s	passed
testVariantOrder[1]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf], null, 13)	0.008s	passed
testVariantOrder[2]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf], null, 26)	0.010s	passed
testVariantOrder[3]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_1.vcf, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_2.vcf], null, 26)	0.010s	passed
testVariantOrder[4]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf], 1, 14)	0.008s	passed
testVariantOrder[5]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf], 1, 7)	0.007s	passed
testVariantOrder[6]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf], 1, 14)	0.009s	passed
testVariantOrder[7]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf], 2:200-600, 3)	0.008s	passed
testVariantsFromBundleOrder[0](gs://hellbender-test-logs/staging/remoteBundles/remote_bundle_test4abc6fb5-b1b3-4b1c-b79d-beb7e7cf3270dir/remote_bundle.json, 1, 14)	6.061s	passed
testVariantsFromBundleOrder[1](gs://hellbender-test-logs/staging/remoteBundles/remote_bundle_test513729bc-b163-4452-a7fe-84755f58458ddir/remote_bundle.json, 2:200-600, 3)	3.385s	passed
Standard error

14:45:24.758 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:24.758 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
14:45:24.758 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:45:24.758 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
14:45:24.758 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:45:24.758 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 2:45:24 PM UTC
14:45:24.758 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:24.758 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:24.759 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:45:24.759 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:45:24.759 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:45:24.759 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:45:24.759 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:45:24.759 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:45:24.759 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:45:24.759 INFO  TestMultiVariantWalker - Requester pays: disabled
14:45:24.759 INFO  TestMultiVariantWalker - Initializing engine
14:45:24.761 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
14:45:24.761 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 2:45:24 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1965031424
14:45:24.767 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:24.767 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
14:45:24.767 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:45:24.767 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
14:45:24.767 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:45:24.767 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 2:45:24 PM UTC
14:45:24.767 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:24.767 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:24.768 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:45:24.768 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:45:24.768 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:45:24.768 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:45:24.768 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:45:24.768 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:45:24.768 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:45:24.768 INFO  TestMultiVariantWalker - Requester pays: disabled
14:45:24.768 INFO  TestMultiVariantWalker - Initializing engine
14:45:24.769 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
14:45:24.770 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
14:45:24.774 INFO  TestMultiVariantWalker - Done initializing engine
14:45:24.774 INFO  ProgressMeter - Starting traversal
14:45:24.774 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:45:24.777 INFO  ProgressMeter -             unmapped              0.0                    26         780000.0
14:45:24.777 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
14:45:24.777 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 2:45:24 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1965031424
14:45:24.782 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:24.782 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
14:45:24.782 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:45:24.782 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
14:45:24.782 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:45:24.782 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 2:45:24 PM UTC
14:45:24.782 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:24.782 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:24.782 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:45:24.782 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:45:24.782 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:45:24.783 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:45:24.783 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:45:24.783 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:45:24.783 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:45:24.783 INFO  TestMultiVariantWalker - Requester pays: disabled
14:45:24.783 INFO  TestMultiVariantWalker - Initializing engine
14:45:24.784 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
14:45:24.785 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariantsConflictingDictionary.vcf
14:45:24.786 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 2:45:24 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1965031424
14:45:24.791 INFO  TestMultiVariantWalkerIterator - ------------------------------------------------------------
14:45:24.791 INFO  TestMultiVariantWalkerIterator - org.broadinstitute.hellbender.engine vUnavailable
14:45:24.791 INFO  TestMultiVariantWalkerIterator - For support and documentation go to https://software.broadinstitute.org/gatk/
14:45:24.791 INFO  TestMultiVariantWalkerIterator - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
14:45:24.791 INFO  TestMultiVariantWalkerIterator - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:45:24.791 INFO  TestMultiVariantWalkerIterator - Start Date/Time: May 27, 2025 at 2:45:24 PM UTC
14:45:24.791 INFO  TestMultiVariantWalkerIterator - ------------------------------------------------------------
14:45:24.792 INFO  TestMultiVariantWalkerIterator - ------------------------------------------------------------
14:45:24.792 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:45:24.792 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:45:24.792 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:45:24.792 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:45:24.792 INFO  TestMultiVariantWalkerIterator - Deflater: IntelDeflater
14:45:24.792 INFO  TestMultiVariantWalkerIterator - Inflater: IntelInflater
14:45:24.792 INFO  TestMultiVariantWalkerIterator - GCS max retries/reopens: 20
14:45:24.792 INFO  TestMultiVariantWalkerIterator - Requester pays: disabled
14:45:24.792 INFO  TestMultiVariantWalkerIterator - Initializing engine
14:45:24.794 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_WithOverlap.vcf
14:45:24.795 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_WithOverlap.vcf
14:45:24.798 INFO  TestMultiVariantWalkerIterator - Done initializing engine
14:45:24.798 INFO  ProgressMeter - Starting traversal
14:45:24.798 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:45:24.799 INFO  ProgressMeter -             unmapped              0.0                    28        1680000.0
14:45:24.799 INFO  ProgressMeter - Traversal complete. Processed 28 total variants in 0.0 minutes.
14:45:24.799 INFO  TestMultiVariantWalkerIterator - Shutting down engine
[May 27, 2025 at 2:45:24 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalkerIterator done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1965031424
14:45:24.804 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:24.804 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
14:45:24.804 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:45:24.804 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
14:45:24.804 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:45:24.804 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 2:45:24 PM UTC
14:45:24.804 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:24.804 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:24.804 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:45:24.804 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:45:24.804 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:45:24.804 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:45:24.805 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:45:24.805 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:45:24.805 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:45:24.805 INFO  TestMultiVariantWalker - Requester pays: disabled
14:45:24.805 INFO  TestMultiVariantWalker - Initializing engine
14:45:24.806 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf
14:45:24.808 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf
14:45:24.809 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf. The input may not exist or may not have a valid header
14:45:24.809 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf. The input may not exist or may not have a valid header
14:45:24.809 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 2:45:24 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1965031424
14:45:24.813 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:24.813 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
14:45:24.813 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:45:24.814 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
14:45:24.814 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:45:24.814 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 2:45:24 PM UTC
14:45:24.814 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:24.814 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:24.814 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:45:24.814 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:45:24.814 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:45:24.814 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:45:24.814 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:45:24.814 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:45:24.814 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:45:24.814 INFO  TestMultiVariantWalker - Requester pays: disabled
14:45:24.814 INFO  TestMultiVariantWalker - Initializing engine
14:45:24.815 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
14:45:24.816 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf
14:45:24.817 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf. The input may not exist or may not have a valid header
14:45:24.817 INFO  TestMultiVariantWalker - Done initializing engine
14:45:24.817 INFO  ProgressMeter - Starting traversal
14:45:24.817 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:45:24.819 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
14:45:24.819 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
14:45:24.819 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 2:45:24 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1965031424
14:45:24.823 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:24.823 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
14:45:24.823 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:45:24.823 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
14:45:24.823 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:45:24.823 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 2:45:24 PM UTC
14:45:24.823 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:24.823 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:24.824 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:45:24.824 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:45:24.824 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:45:24.824 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:45:24.824 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:45:24.824 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:45:24.824 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:45:24.824 INFO  TestMultiVariantWalker - Requester pays: disabled
14:45:24.824 INFO  TestMultiVariantWalker - Initializing engine
14:45:24.825 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf
14:45:24.825 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf. The input may not exist or may not have a valid header
14:45:24.825 INFO  TestMultiVariantWalker - Done initializing engine
14:45:24.825 INFO  ProgressMeter - Starting traversal
14:45:24.826 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:45:24.826 INFO  ProgressMeter -             unmapped              0.0                    13         Infinity
14:45:24.826 INFO  ProgressMeter - Traversal complete. Processed 13 total variants in 0.0 minutes.
14:45:24.826 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 2:45:24 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1965031424
14:45:24.830 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:24.830 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
14:45:24.831 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:45:24.831 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
14:45:24.831 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:45:24.831 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 2:45:24 PM UTC
14:45:24.831 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:24.831 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:24.831 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:45:24.831 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:45:24.831 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:45:24.831 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:45:24.831 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:45:24.831 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:45:24.831 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:45:24.831 INFO  TestMultiVariantWalker - Requester pays: disabled
14:45:24.831 INFO  TestMultiVariantWalker - Initializing engine
14:45:24.832 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
14:45:24.833 INFO  TestMultiVariantWalker - Done initializing engine
14:45:24.833 INFO  ProgressMeter - Starting traversal
14:45:24.833 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:45:24.834 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
14:45:24.834 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
14:45:24.834 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 2:45:24 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1965031424
14:45:24.838 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:24.838 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
14:45:24.838 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:45:24.838 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
14:45:24.838 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:45:24.838 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 2:45:24 PM UTC
14:45:24.838 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:24.838 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:24.838 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:45:24.838 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:45:24.839 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:45:24.839 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:45:24.839 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:45:24.839 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:45:24.839 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:45:24.839 INFO  TestMultiVariantWalker - Requester pays: disabled
14:45:24.839 INFO  TestMultiVariantWalker - Initializing engine
14:45:24.840 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
14:45:24.841 INFO  TestMultiVariantWalker - Done initializing engine
14:45:24.841 INFO  ProgressMeter - Starting traversal
14:45:24.841 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:45:24.842 INFO  ProgressMeter -             unmapped              0.0                    13         780000.0
14:45:24.842 INFO  ProgressMeter - Traversal complete. Processed 13 total variants in 0.0 minutes.
14:45:24.842 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 2:45:24 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1965031424
14:45:24.846 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:24.846 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
14:45:24.846 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:45:24.846 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
14:45:24.846 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:45:24.846 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 2:45:24 PM UTC
14:45:24.846 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:24.847 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:24.847 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:45:24.847 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:45:24.847 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:45:24.847 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:45:24.847 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:45:24.847 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:45:24.847 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:45:24.847 INFO  TestMultiVariantWalker - Requester pays: disabled
14:45:24.847 INFO  TestMultiVariantWalker - Initializing engine
14:45:24.848 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
14:45:24.849 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
14:45:24.851 INFO  TestMultiVariantWalker - Done initializing engine
14:45:24.851 INFO  ProgressMeter - Starting traversal
14:45:24.851 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:45:24.852 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
14:45:24.852 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
14:45:24.852 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 2:45:24 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1965031424
14:45:24.856 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:24.856 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
14:45:24.856 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:45:24.856 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
14:45:24.856 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:45:24.856 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 2:45:24 PM UTC
14:45:24.856 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:24.856 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:24.856 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:45:24.856 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:45:24.857 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:45:24.857 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:45:24.857 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:45:24.857 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:45:24.857 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:45:24.857 INFO  TestMultiVariantWalker - Requester pays: disabled
14:45:24.857 INFO  TestMultiVariantWalker - Initializing engine
14:45:24.858 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_1.vcf
14:45:24.859 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_2.vcf
14:45:24.861 INFO  TestMultiVariantWalker - Done initializing engine
14:45:24.861 INFO  ProgressMeter - Starting traversal
14:45:24.861 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:45:24.862 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
14:45:24.862 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
14:45:24.862 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 2:45:24 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1965031424
14:45:24.867 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:24.867 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
14:45:24.867 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:45:24.867 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
14:45:24.867 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:45:24.867 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 2:45:24 PM UTC
14:45:24.867 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:24.867 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:24.867 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:45:24.867 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:45:24.867 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:45:24.867 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:45:24.867 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:45:24.868 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:45:24.868 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:45:24.868 INFO  TestMultiVariantWalker - Requester pays: disabled
14:45:24.868 INFO  TestMultiVariantWalker - Initializing engine
14:45:24.869 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
14:45:24.870 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
14:45:24.870 INFO  TestMultiVariantWalker - Done initializing engine
14:45:24.870 INFO  ProgressMeter - Starting traversal
14:45:24.870 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:45:24.871 INFO  ProgressMeter -             unmapped              0.0                    14         840000.0
14:45:24.871 INFO  ProgressMeter - Traversal complete. Processed 14 total variants in 0.0 minutes.
14:45:24.871 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 2:45:24 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1965031424
14:45:24.875 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:24.875 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
14:45:24.875 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:45:24.875 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
14:45:24.875 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:45:24.875 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 2:45:24 PM UTC
14:45:24.875 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:24.875 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:24.875 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:45:24.875 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:45:24.875 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:45:24.876 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:45:24.876 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:45:24.876 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:45:24.876 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:45:24.876 INFO  TestMultiVariantWalker - Requester pays: disabled
14:45:24.876 INFO  TestMultiVariantWalker - Initializing engine
14:45:24.876 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
14:45:24.877 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
14:45:24.877 INFO  TestMultiVariantWalker - Done initializing engine
14:45:24.877 INFO  ProgressMeter - Starting traversal
14:45:24.877 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:45:24.878 INFO  ProgressMeter -             unmapped              0.0                     7         Infinity
14:45:24.878 INFO  ProgressMeter - Traversal complete. Processed 7 total variants in 0.0 minutes.
14:45:24.878 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 2:45:24 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1965031424
14:45:24.882 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:24.882 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
14:45:24.882 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:45:24.882 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
14:45:24.882 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:45:24.882 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 2:45:24 PM UTC
14:45:24.882 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:24.882 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:24.882 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:45:24.882 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:45:24.882 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:45:24.882 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:45:24.883 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:45:24.883 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:45:24.883 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:45:24.883 INFO  TestMultiVariantWalker - Requester pays: disabled
14:45:24.883 INFO  TestMultiVariantWalker - Initializing engine
14:45:24.883 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
14:45:24.884 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
14:45:24.886 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
14:45:24.886 INFO  TestMultiVariantWalker - Done initializing engine
14:45:24.886 INFO  ProgressMeter - Starting traversal
14:45:24.886 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:45:24.887 INFO  ProgressMeter -             unmapped              0.0                    14         840000.0
14:45:24.887 INFO  ProgressMeter - Traversal complete. Processed 14 total variants in 0.0 minutes.
14:45:24.887 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 2:45:24 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1965031424
14:45:24.890 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:24.890 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
14:45:24.891 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:45:24.891 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
14:45:24.891 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:45:24.891 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 2:45:24 PM UTC
14:45:24.891 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:24.891 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:24.891 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:45:24.891 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:45:24.891 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:45:24.891 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:45:24.891 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:45:24.891 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:45:24.891 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:45:24.891 INFO  TestMultiVariantWalker - Requester pays: disabled
14:45:24.891 INFO  TestMultiVariantWalker - Initializing engine
14:45:24.892 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
14:45:24.893 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
14:45:24.894 INFO  IntervalArgumentCollection - Processing 401 bp from intervals
14:45:24.894 INFO  TestMultiVariantWalker - Done initializing engine
14:45:24.895 INFO  ProgressMeter - Starting traversal
14:45:24.895 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:45:24.895 INFO  ProgressMeter -             unmapped              0.0                     3         Infinity
14:45:24.895 INFO  ProgressMeter - Traversal complete. Processed 3 total variants in 0.0 minutes.
14:45:24.895 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 2:45:24 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1965031424
14:45:30.282 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:30.282 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
14:45:30.282 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:45:30.283 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
14:45:30.283 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:45:30.283 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 2:45:30 PM UTC
14:45:30.283 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:30.283 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:30.283 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:45:30.283 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:45:30.283 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:45:30.283 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:45:30.283 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:45:30.283 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:45:30.283 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:45:30.283 INFO  TestMultiVariantWalker - Requester pays: disabled
14:45:30.283 INFO  TestMultiVariantWalker - Initializing engine
14:45:32.832 INFO  FeatureManager - Using codec VCFCodec to read file gs://hellbender-test-logs/staging/remoteBundles/remote_bundle_test4abc6fb5-b1b3-4b1c-b79d-beb7e7cf3270dir/interleavedVariants_1.vcf
14:45:35.292 INFO  FeatureManager - Using codec VCFCodec to read file gs://hellbender-test-logs/staging/remoteBundles/remote_bundle_test4abc6fb5-b1b3-4b1c-b79d-beb7e7cf3270dir/interleavedVariants_2.vcf
14:45:36.118 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
14:45:36.118 INFO  TestMultiVariantWalker - Done initializing engine
14:45:36.118 INFO  ProgressMeter - Starting traversal
14:45:36.118 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:45:36.336 INFO  ProgressMeter -             unmapped              0.0                    14           3853.2
14:45:36.336 INFO  ProgressMeter - Traversal complete. Processed 14 total variants in 0.0 minutes.
14:45:36.336 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 2:45:36 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.10 minutes.
Runtime.totalMemory()=1965031424
14:45:36.344 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:36.344 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
14:45:36.344 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:45:36.344 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
14:45:36.344 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:45:36.344 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 2:45:36 PM UTC
14:45:36.344 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:36.344 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:45:36.344 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:45:36.345 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:45:36.345 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:45:36.345 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:45:36.345 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:45:36.345 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:45:36.345 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:45:36.345 INFO  TestMultiVariantWalker - Requester pays: disabled
14:45:36.345 INFO  TestMultiVariantWalker - Initializing engine
14:45:37.483 INFO  FeatureManager - Using codec VCFCodec to read file gs://hellbender-test-logs/staging/remoteBundles/remote_bundle_test513729bc-b163-4452-a7fe-84755f58458ddir/interleavedVariants_1.vcf
14:45:38.734 INFO  FeatureManager - Using codec VCFCodec to read file gs://hellbender-test-logs/staging/remoteBundles/remote_bundle_test513729bc-b163-4452-a7fe-84755f58458ddir/interleavedVariants_2.vcf
14:45:39.325 INFO  IntervalArgumentCollection - Processing 401 bp from intervals
14:45:39.325 INFO  TestMultiVariantWalker - Done initializing engine
14:45:39.325 INFO  ProgressMeter - Starting traversal
14:45:39.325 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:45:39.721 INFO  ProgressMeter -             unmapped              0.0                     3            454.5
14:45:39.721 INFO  ProgressMeter - Traversal complete. Processed 3 total variants in 0.0 minutes.
14:45:39.721 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 2:45:39 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.06 minutes.
Runtime.totalMemory()=1965031424