Class org.broadinstitute.hellbender.tools.IndexFeatureFileIntegrationTest
Tests
| Test |
Duration |
Result |
| testBCFIndex |
0.066s |
passed |
| testBedGZIndex |
0.066s |
passed |
| testBedIndex |
0.060s |
passed |
| testCompressedBCF2_2Index |
0.061s |
passed |
| testEnsemblGtfIndex |
0.220s |
passed |
| testEnsemblGtfIndexQuery[0](Chromosome:3019160-3020500, 1, [Lorg.broadinstitute.hellbender.utils.SimpleInterval;@6b20a25, [Ljava.lang.String;@74da1cb3, [Ljava.lang.String;@43a5443f) |
0.004s |
passed |
| testEnsemblGtfIndexQuery[1](Chromosome:3286269-3288786, 4, [Lorg.broadinstitute.hellbender.utils.SimpleInterval;@6a0ce603, [Ljava.lang.String;@361c3c1, [Ljava.lang.String;@4f383036) |
0.003s |
passed |
| testGVCFIndex |
0.069s |
passed |
| testGVCFTreatedAsVCFIndex |
0.072s |
passed |
| testIndexBCFFileGZ |
0.067s |
passed |
| testIndexNonFeatureFileGZ |
0.067s |
passed |
| testNewGencodeLiftoverGtfFile |
0.066s |
passed |
| testSAMPileupGZIndex |
0.072s |
passed |
| testUncompressedBCF2_2Index |
0.091s |
passed |
| testVCFGZIPIndex |
0.095s |
passed |
| testVCFGZIPIndex_inferredName |
0.066s |
passed |
| testVCFGZIndex_inferredName |
0.060s |
passed |
| testVCFGZIndex_tabix |
0.057s |
passed |
| testVCFGZIndex_tabixRequires_tbi_name |
0.055s |
passed |
| testVCFGZLargeHeaderIndex_tabix |
0.095s |
passed |
| testVCFIndex |
0.083s |
passed |
| testVCFIndex_cannotWrite |
0.087s |
passed |
| testVCFIndex_inferredName |
0.066s |
passed |
| testVCFIndex_missingFile |
0.065s |
passed |
| testVCFWithNoRecords |
0.065s |
passed |
Standard error
[May 27, 2025 at 2:48:18 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 2:48:18 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 2:48:18 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 2:48:18 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 2:48:19 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 2:48:19 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 2:48:19 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 2:48:19 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 2:48:19 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 2:48:19 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 2:48:19 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 2:48:19 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 2:48:19 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 2:48:19 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 2:48:19 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 2:48:19 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 2:48:19 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 2:48:19 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 2:48:20 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 2:48:20 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 2:48:20 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 2:48:20 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 2:48:20 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000