Class org.broadinstitute.hellbender.tools.spark.ApplyBQSRSparkIntegrationTest

all > org.broadinstitute.hellbender.tools.spark > ApplyBQSRSparkIntegrationTest
9

tests
0

failures
0

ignored
4.945s

duration
100%

successful

Tests

Test Duration Result
testApplyBQSR[0](ApplyBQSR(args='--quantize-quals -1')) 0.870s passed
testApplyBQSR[1](ApplyBQSR(args='--quantize-quals 6')) 0.646s passed
testApplyBQSR[2](ApplyBQSR(args='null')) 0.637s passed
testApplyBQSR[3](ApplyBQSR(args='-OQ')) 0.588s passed
testApplyBQSR[4](ApplyBQSR(args='--static-quantized-quals 10 --static-quantized-quals 20 --static-quantized-quals 30')) 0.575s passed
testApplyBQSR[5](ApplyBQSR(args='--static-quantized-quals 10 --static-quantized-quals 20 --static-quantized-quals 30 --round-down-quantized')) 0.569s passed
testApplyBQSR[6](ApplyBQSR(args='--disable-sequence-dictionary-validation true')) 0.434s passed
testPRFailWithLowMaxCycle 0.161s passed
testPRNoFailWithHighMaxCycle 0.465s passed

Standard output

--------------------------------------------------------------------------------
[14:55:01] Executing test ApplyBQSRSparkIntegrationTest:testPRFailWithLowMaxCycle
--------------------------------------------------------------------------------
[14:55:01] Executing test ApplyBQSRSparkIntegrationTest:testPRNoFailWithHighMaxCycle

Standard error

[May 27, 2025 at 2:54:58 PM UTC] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=3204448256
[May 27, 2025 at 2:54:58 PM UTC] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=3204448256
[May 27, 2025 at 2:54:59 PM UTC] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=3204448256
[May 27, 2025 at 2:54:59 PM UTC] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=3204448256
[May 27, 2025 at 2:55:00 PM UTC] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=3204448256
[May 27, 2025 at 2:55:01 PM UTC] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=3204448256
[May 27, 2025 at 2:55:01 PM UTC] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=3204448256
[May 27, 2025 at 2:55:01 PM UTC] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3204448256
[May 27, 2025 at 2:55:02 PM UTC] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=3204448256