[May 27, 2025 at 2:58:37 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectMultipleMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1342177280
[May 27, 2025 at 2:58:37 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectMultipleMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1342177280
[May 27, 2025 at 2:58:38 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectMultipleMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1342177280
14:58:38.121 INFO CollectMultipleMetricsSpark - ------------------------------------------------------------
14:58:38.121 INFO CollectMultipleMetricsSpark - org.broadinstitute.hellbender.tools.spark.pipelines.metrics vUnavailable
14:58:38.121 INFO CollectMultipleMetricsSpark - For support and documentation go to https://software.broadinstitute.org/gatk/
14:58:38.121 INFO CollectMultipleMetricsSpark - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
14:58:38.121 INFO CollectMultipleMetricsSpark - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:58:38.121 INFO CollectMultipleMetricsSpark - Start Date/Time: May 27, 2025 at 2:58:38 PM UTC
14:58:38.121 INFO CollectMultipleMetricsSpark - ------------------------------------------------------------
14:58:38.121 INFO CollectMultipleMetricsSpark - ------------------------------------------------------------
14:58:38.121 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:58:38.121 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:58:38.121 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:58:38.121 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:58:38.121 INFO CollectMultipleMetricsSpark - Deflater: IntelDeflater
14:58:38.121 INFO CollectMultipleMetricsSpark - Inflater: IntelInflater
14:58:38.121 INFO CollectMultipleMetricsSpark - GCS max retries/reopens: 20
14:58:38.121 INFO CollectMultipleMetricsSpark - Requester pays: disabled
14:58:38.121 WARN CollectMultipleMetricsSpark -
?[1m?[31m !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
Warning: CollectMultipleMetricsSpark is a BETA tool and is not yet ready for use in production
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!?[0m
14:58:38.121 INFO CollectMultipleMetricsSpark - Initializing engine
14:58:38.121 INFO CollectMultipleMetricsSpark - Done initializing engine
14:58:38.121 INFO CollectMultipleMetricsSpark - Spark verbosity set to INFO (see --spark-verbosity argument)
WARNING 2025-05-27 14:58:38 SamReaderFactory Unable to detect file format from input URL or stream, assuming SAM format.
WARNING 2025-05-27 14:58:38 SamReaderFactory Unable to detect file format from input URL or stream, assuming SAM format.
14:58:38.122 INFO MemoryStore - Block broadcast_3408 stored as values in memory (estimated size 37.8 KiB, free 1916.8 MiB)
14:58:38.123 INFO MemoryStore - Block broadcast_3408_piece0 stored as bytes in memory (estimated size 8.4 KiB, free 1916.8 MiB)
14:58:38.123 INFO BlockManagerInfo - Added broadcast_3408_piece0 in memory on localhost:35475 (size: 8.4 KiB, free: 1919.1 MiB)
14:58:38.123 INFO SparkContext - Created broadcast 3408 from broadcast at SamSource.java:78
14:58:38.124 INFO MemoryStore - Block broadcast_3409 stored as values in memory (estimated size 306.3 KiB, free 1916.5 MiB)
14:58:38.130 INFO MemoryStore - Block broadcast_3409_piece0 stored as bytes in memory (estimated size 64.4 KiB, free 1916.4 MiB)
14:58:38.130 INFO BlockManagerInfo - Added broadcast_3409_piece0 in memory on localhost:35475 (size: 64.4 KiB, free: 1919.1 MiB)
14:58:38.131 INFO SparkContext - Created broadcast 3409 from newAPIHadoopFile at SamSource.java:108
WARNING 2025-05-27 14:58:38 SamReaderFactory Unable to detect file format from input URL or stream, assuming SAM format.
WARNING 2025-05-27 14:58:38 SamReaderFactory Unable to detect file format from input URL or stream, assuming SAM format.
14:58:38.133 INFO MemoryStore - Block broadcast_3410 stored as values in memory (estimated size 37.8 KiB, free 1916.4 MiB)
14:58:38.133 INFO MemoryStore - Block broadcast_3410_piece0 stored as bytes in memory (estimated size 8.4 KiB, free 1916.4 MiB)
14:58:38.133 INFO BlockManagerInfo - Added broadcast_3410_piece0 in memory on localhost:35475 (size: 8.4 KiB, free: 1919.1 MiB)
14:58:38.133 INFO SparkContext - Created broadcast 3410 from broadcast at SamSource.java:78
14:58:38.134 INFO MemoryStore - Block broadcast_3411 stored as values in memory (estimated size 306.3 KiB, free 1916.1 MiB)
14:58:38.140 INFO MemoryStore - Block broadcast_3411_piece0 stored as bytes in memory (estimated size 64.4 KiB, free 1916.0 MiB)
14:58:38.140 INFO BlockManagerInfo - Added broadcast_3411_piece0 in memory on localhost:35475 (size: 64.4 KiB, free: 1919.0 MiB)
14:58:38.141 INFO SparkContext - Created broadcast 3411 from newAPIHadoopFile at SamSource.java:108
14:58:38.143 INFO FileInputFormat - Total input files to process : 1
14:58:38.146 INFO SparkContext - Starting job: count at CollectMultipleMetricsSparkIntegrationTest.java:130
14:58:38.146 INFO DAGScheduler - Got job 892 (count at CollectMultipleMetricsSparkIntegrationTest.java:130) with 1 output partitions
14:58:38.146 INFO DAGScheduler - Final stage: ResultStage 2485 (count at CollectMultipleMetricsSparkIntegrationTest.java:130)
14:58:38.146 INFO DAGScheduler - Parents of final stage: List()
14:58:38.146 INFO DAGScheduler - Missing parents: List()
14:58:38.146 INFO DAGScheduler - Submitting ResultStage 2485 (MapPartitionsRDD[10243] at filter at CollectMultipleMetricsSpark.java:193), which has no missing parents
14:58:38.147 INFO MemoryStore - Block broadcast_3412 stored as values in memory (estimated size 34.8 KiB, free 1916.0 MiB)
14:58:38.147 INFO MemoryStore - Block broadcast_3412_piece0 stored as bytes in memory (estimated size 14.6 KiB, free 1916.0 MiB)
14:58:38.147 INFO BlockManagerInfo - Added broadcast_3412_piece0 in memory on localhost:35475 (size: 14.6 KiB, free: 1919.0 MiB)
14:58:38.147 INFO SparkContext - Created broadcast 3412 from broadcast at DAGScheduler.scala:1580
14:58:38.147 INFO DAGScheduler - Submitting 1 missing tasks from ResultStage 2485 (MapPartitionsRDD[10243] at filter at CollectMultipleMetricsSpark.java:193) (first 15 tasks are for partitions Vector(0))
14:58:38.147 INFO TaskSchedulerImpl - Adding task set 2485.0 with 1 tasks resource profile 0
14:58:38.148 INFO TaskSetManager - Starting task 0.0 in stage 2485.0 (TID 1916) (localhost, executor driver, partition 0, PROCESS_LOCAL, 9772 bytes)
14:58:38.148 INFO Executor - Running task 0.0 in stage 2485.0 (TID 1916)
14:58:38.149 INFO NewHadoopRDD - Input split: file:/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/metrics/analysis/CollectInsertSizeMetrics/insert_size_metrics_test.sam:0+44008
14:58:38.150 INFO Executor - Finished task 0.0 in stage 2485.0 (TID 1916). 946 bytes result sent to driver
14:58:38.150 INFO TaskSetManager - Finished task 0.0 in stage 2485.0 (TID 1916) in 2 ms on localhost (executor driver) (1/1)
14:58:38.150 INFO TaskSchedulerImpl - Removed TaskSet 2485.0, whose tasks have all completed, from pool
14:58:38.150 INFO DAGScheduler - ResultStage 2485 (count at CollectMultipleMetricsSparkIntegrationTest.java:130) finished in 0.004 s
14:58:38.150 INFO DAGScheduler - Job 892 is finished. Cancelling potential speculative or zombie tasks for this job
14:58:38.150 INFO TaskSchedulerImpl - Killing all running tasks in stage 2485: Stage finished
14:58:38.150 INFO DAGScheduler - Job 892 finished: count at CollectMultipleMetricsSparkIntegrationTest.java:130, took 0.004401 s
14:58:38.150 INFO CollectMultipleMetricsSpark - Shutting down engine
[May 27, 2025 at 2:58:38 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectMultipleMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1342177280
14:58:38.155 INFO CollectMultipleMetricsSpark - ------------------------------------------------------------
14:58:38.155 INFO CollectMultipleMetricsSpark - org.broadinstitute.hellbender.tools.spark.pipelines.metrics vUnavailable
14:58:38.155 INFO CollectMultipleMetricsSpark - For support and documentation go to https://software.broadinstitute.org/gatk/
14:58:38.155 INFO CollectMultipleMetricsSpark - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
14:58:38.155 INFO CollectMultipleMetricsSpark - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:58:38.155 INFO CollectMultipleMetricsSpark - Start Date/Time: May 27, 2025 at 2:58:38 PM UTC
14:58:38.155 INFO CollectMultipleMetricsSpark - ------------------------------------------------------------
14:58:38.155 INFO CollectMultipleMetricsSpark - ------------------------------------------------------------
14:58:38.155 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:58:38.155 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:58:38.155 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:58:38.155 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:58:38.155 INFO CollectMultipleMetricsSpark - Deflater: IntelDeflater
14:58:38.155 INFO CollectMultipleMetricsSpark - Inflater: IntelInflater
14:58:38.155 INFO CollectMultipleMetricsSpark - GCS max retries/reopens: 20
14:58:38.155 INFO CollectMultipleMetricsSpark - Requester pays: disabled
14:58:38.155 WARN CollectMultipleMetricsSpark -
?[1m?[31m !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
Warning: CollectMultipleMetricsSpark is a BETA tool and is not yet ready for use in production
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!?[0m
14:58:38.155 INFO CollectMultipleMetricsSpark - Initializing engine
14:58:38.155 INFO CollectMultipleMetricsSpark - Done initializing engine
14:58:38.155 INFO CollectMultipleMetricsSpark - Spark verbosity set to INFO (see --spark-verbosity argument)
14:58:38.156 INFO MemoryStore - Block broadcast_3413 stored as values in memory (estimated size 306.3 KiB, free 1915.7 MiB)
14:58:38.163 INFO MemoryStore - Block broadcast_3413_piece0 stored as bytes in memory (estimated size 64.4 KiB, free 1915.6 MiB)
14:58:38.163 INFO BlockManagerInfo - Added broadcast_3413_piece0 in memory on localhost:35475 (size: 64.4 KiB, free: 1918.9 MiB)
14:58:38.163 INFO SparkContext - Created broadcast 3413 from newAPIHadoopFile at PathSplitSource.java:96
14:58:38.183 INFO MemoryStore - Block broadcast_3414 stored as values in memory (estimated size 306.3 KiB, free 1915.3 MiB)
14:58:38.190 INFO MemoryStore - Block broadcast_3414_piece0 stored as bytes in memory (estimated size 64.4 KiB, free 1915.3 MiB)
14:58:38.190 INFO BlockManagerInfo - Added broadcast_3414_piece0 in memory on localhost:35475 (size: 64.4 KiB, free: 1918.9 MiB)
14:58:38.190 INFO SparkContext - Created broadcast 3414 from newAPIHadoopFile at PathSplitSource.java:96
14:58:38.210 INFO FileInputFormat - Total input files to process : 1
14:58:38.213 INFO SparkContext - Starting job: count at CollectMultipleMetricsSparkIntegrationTest.java:130
14:58:38.213 INFO DAGScheduler - Got job 893 (count at CollectMultipleMetricsSparkIntegrationTest.java:130) with 1 output partitions
14:58:38.213 INFO DAGScheduler - Final stage: ResultStage 2486 (count at CollectMultipleMetricsSparkIntegrationTest.java:130)
14:58:38.213 INFO DAGScheduler - Parents of final stage: List()
14:58:38.214 INFO DAGScheduler - Missing parents: List()
14:58:38.214 INFO DAGScheduler - Submitting ResultStage 2486 (MapPartitionsRDD[10256] at filter at CollectMultipleMetricsSpark.java:193), which has no missing parents
14:58:38.230 INFO MemoryStore - Block broadcast_3415 stored as values in memory (estimated size 478.0 KiB, free 1914.8 MiB)
14:58:38.232 INFO MemoryStore - Block broadcast_3415_piece0 stored as bytes in memory (estimated size 208.0 KiB, free 1914.6 MiB)
14:58:38.233 INFO BlockManagerInfo - Added broadcast_3415_piece0 in memory on localhost:35475 (size: 208.0 KiB, free: 1918.7 MiB)
14:58:38.233 INFO SparkContext - Created broadcast 3415 from broadcast at DAGScheduler.scala:1580
14:58:38.233 INFO DAGScheduler - Submitting 1 missing tasks from ResultStage 2486 (MapPartitionsRDD[10256] at filter at CollectMultipleMetricsSpark.java:193) (first 15 tasks are for partitions Vector(0))
14:58:38.233 INFO TaskSchedulerImpl - Adding task set 2486.0 with 1 tasks resource profile 0
14:58:38.233 INFO TaskSetManager - Starting task 0.0 in stage 2486.0 (TID 1917) (localhost, executor driver, partition 0, PROCESS_LOCAL, 9772 bytes)
14:58:38.233 INFO Executor - Running task 0.0 in stage 2486.0 (TID 1917)
14:58:38.262 INFO NewHadoopRDD - Input split: file:/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/metrics/analysis/CollectInsertSizeMetrics/insert_size_metrics_test.bam:0+8071
14:58:38.265 INFO Executor - Finished task 0.0 in stage 2486.0 (TID 1917). 989 bytes result sent to driver
14:58:38.265 INFO TaskSetManager - Finished task 0.0 in stage 2486.0 (TID 1917) in 32 ms on localhost (executor driver) (1/1)
14:58:38.266 INFO TaskSchedulerImpl - Removed TaskSet 2486.0, whose tasks have all completed, from pool
14:58:38.266 INFO DAGScheduler - ResultStage 2486 (count at CollectMultipleMetricsSparkIntegrationTest.java:130) finished in 0.052 s
14:58:38.266 INFO DAGScheduler - Job 893 is finished. Cancelling potential speculative or zombie tasks for this job
14:58:38.266 INFO TaskSchedulerImpl - Killing all running tasks in stage 2486: Stage finished
14:58:38.266 INFO DAGScheduler - Job 893 finished: count at CollectMultipleMetricsSparkIntegrationTest.java:130, took 0.052420 s
14:58:38.266 INFO CollectMultipleMetricsSpark - Shutting down engine
[May 27, 2025 at 2:58:38 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectMultipleMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1342177280
14:58:38.270 INFO CollectMultipleMetricsSpark - ------------------------------------------------------------
14:58:38.270 INFO CollectMultipleMetricsSpark - org.broadinstitute.hellbender.tools.spark.pipelines.metrics vUnavailable
14:58:38.270 INFO CollectMultipleMetricsSpark - For support and documentation go to https://software.broadinstitute.org/gatk/
14:58:38.270 INFO CollectMultipleMetricsSpark - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
14:58:38.270 INFO CollectMultipleMetricsSpark - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:58:38.270 INFO CollectMultipleMetricsSpark - Start Date/Time: May 27, 2025 at 2:58:38 PM UTC
14:58:38.270 INFO CollectMultipleMetricsSpark - ------------------------------------------------------------
14:58:38.270 INFO CollectMultipleMetricsSpark - ------------------------------------------------------------
14:58:38.270 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:58:38.270 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:58:38.270 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:58:38.270 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:58:38.270 INFO CollectMultipleMetricsSpark - Deflater: IntelDeflater
14:58:38.270 INFO CollectMultipleMetricsSpark - Inflater: IntelInflater
14:58:38.270 INFO CollectMultipleMetricsSpark - GCS max retries/reopens: 20
14:58:38.270 INFO CollectMultipleMetricsSpark - Requester pays: disabled
14:58:38.270 WARN CollectMultipleMetricsSpark -
?[1m?[31m !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
Warning: CollectMultipleMetricsSpark is a BETA tool and is not yet ready for use in production
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!?[0m
14:58:38.270 INFO CollectMultipleMetricsSpark - Initializing engine
14:58:38.270 INFO CollectMultipleMetricsSpark - Done initializing engine
14:58:38.270 INFO CollectMultipleMetricsSpark - Spark verbosity set to INFO (see --spark-verbosity argument)
14:58:38.272 INFO MemoryStore - Block broadcast_3416 stored as values in memory (estimated size 600.0 B, free 1914.6 MiB)
14:58:38.272 INFO MemoryStore - Block broadcast_3416_piece0 stored as bytes in memory (estimated size 211.0 B, free 1914.6 MiB)
14:58:38.273 INFO BlockManagerInfo - Added broadcast_3416_piece0 in memory on localhost:35475 (size: 211.0 B, free: 1918.7 MiB)
14:58:38.273 INFO SparkContext - Created broadcast 3416 from broadcast at CramSource.java:114
14:58:38.273 INFO MemoryStore - Block broadcast_3417 stored as values in memory (estimated size 306.3 KiB, free 1914.3 MiB)
14:58:38.280 INFO MemoryStore - Block broadcast_3417_piece0 stored as bytes in memory (estimated size 64.4 KiB, free 1914.2 MiB)
14:58:38.280 INFO BlockManagerInfo - Added broadcast_3417_piece0 in memory on localhost:35475 (size: 64.4 KiB, free: 1918.6 MiB)
14:58:38.280 INFO SparkContext - Created broadcast 3417 from newAPIHadoopFile at PathSplitSource.java:96
14:58:38.295 INFO MemoryStore - Block broadcast_3418 stored as values in memory (estimated size 600.0 B, free 1914.2 MiB)
14:58:38.295 INFO MemoryStore - Block broadcast_3418_piece0 stored as bytes in memory (estimated size 211.0 B, free 1914.2 MiB)
14:58:38.295 INFO BlockManagerInfo - Added broadcast_3418_piece0 in memory on localhost:35475 (size: 211.0 B, free: 1918.6 MiB)
14:58:38.295 INFO SparkContext - Created broadcast 3418 from broadcast at CramSource.java:114
14:58:38.296 INFO MemoryStore - Block broadcast_3419 stored as values in memory (estimated size 306.3 KiB, free 1913.9 MiB)
14:58:38.302 INFO MemoryStore - Block broadcast_3419_piece0 stored as bytes in memory (estimated size 64.4 KiB, free 1913.9 MiB)
14:58:38.302 INFO BlockManagerInfo - Added broadcast_3419_piece0 in memory on localhost:35475 (size: 64.4 KiB, free: 1918.5 MiB)
14:58:38.302 INFO SparkContext - Created broadcast 3419 from newAPIHadoopFile at PathSplitSource.java:96
14:58:38.317 INFO FileInputFormat - Total input files to process : 1
14:58:38.320 INFO SparkContext - Starting job: count at CollectMultipleMetricsSparkIntegrationTest.java:130
14:58:38.320 INFO DAGScheduler - Got job 894 (count at CollectMultipleMetricsSparkIntegrationTest.java:130) with 1 output partitions
14:58:38.320 INFO DAGScheduler - Final stage: ResultStage 2487 (count at CollectMultipleMetricsSparkIntegrationTest.java:130)
14:58:38.320 INFO DAGScheduler - Parents of final stage: List()
14:58:38.320 INFO DAGScheduler - Missing parents: List()
14:58:38.320 INFO DAGScheduler - Submitting ResultStage 2487 (MapPartitionsRDD[10267] at filter at CollectMultipleMetricsSpark.java:193), which has no missing parents
14:58:38.331 INFO MemoryStore - Block broadcast_3420 stored as values in memory (estimated size 330.5 KiB, free 1913.5 MiB)
14:58:38.333 INFO MemoryStore - Block broadcast_3420_piece0 stored as bytes in memory (estimated size 143.8 KiB, free 1913.4 MiB)
14:58:38.333 INFO BlockManagerInfo - Added broadcast_3420_piece0 in memory on localhost:35475 (size: 143.8 KiB, free: 1918.4 MiB)
14:58:38.333 INFO SparkContext - Created broadcast 3420 from broadcast at DAGScheduler.scala:1580
14:58:38.333 INFO DAGScheduler - Submitting 1 missing tasks from ResultStage 2487 (MapPartitionsRDD[10267] at filter at CollectMultipleMetricsSpark.java:193) (first 15 tasks are for partitions Vector(0))
14:58:38.333 INFO TaskSchedulerImpl - Adding task set 2487.0 with 1 tasks resource profile 0
14:58:38.334 INFO TaskSetManager - Starting task 0.0 in stage 2487.0 (TID 1918) (localhost, executor driver, partition 0, PROCESS_LOCAL, 9773 bytes)
14:58:38.334 INFO Executor - Running task 0.0 in stage 2487.0 (TID 1918)
14:58:38.354 INFO NewHadoopRDD - Input split: file:/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/metrics/analysis/CollectInsertSizeMetrics/insert_size_metrics_test.cram:0+8617
14:58:38.358 INFO Executor - Finished task 0.0 in stage 2487.0 (TID 1918). 989 bytes result sent to driver
14:58:38.358 INFO TaskSetManager - Finished task 0.0 in stage 2487.0 (TID 1918) in 24 ms on localhost (executor driver) (1/1)
14:58:38.358 INFO TaskSchedulerImpl - Removed TaskSet 2487.0, whose tasks have all completed, from pool
14:58:38.358 INFO DAGScheduler - ResultStage 2487 (count at CollectMultipleMetricsSparkIntegrationTest.java:130) finished in 0.038 s
14:58:38.358 INFO DAGScheduler - Job 894 is finished. Cancelling potential speculative or zombie tasks for this job
14:58:38.358 INFO TaskSchedulerImpl - Killing all running tasks in stage 2487: Stage finished
14:58:38.358 INFO DAGScheduler - Job 894 finished: count at CollectMultipleMetricsSparkIntegrationTest.java:130, took 0.038734 s
14:58:38.359 INFO CollectMultipleMetricsSpark - Shutting down engine
[May 27, 2025 at 2:58:38 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectMultipleMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1342177280