Class org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReadsIntegrationTest
Tests
| Test |
Duration |
Result |
| testLargeFileThatForcesSnappyUsage |
10.930s |
passed |
| testSplitsFixNDN |
0.093s |
passed |
| testSplitsOfUnpairedAndUnmappedReads |
1.499s |
passed |
| testSplitsTargetRegionFunctionality |
0.223s |
passed |
| testSplitsWithOverhangs |
0.362s |
passed |
| testSplitsWithOverhangs0Mismatches |
0.362s |
passed |
| testSplitsWithOverhangs5BasesInOverhang |
0.299s |
passed |
| testSplitsWithOverhangsNotClipping |
0.307s |
passed |
| testSplitsWithoutSecondaryAlignments |
0.419s |
passed |
Standard output
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[15:05:56] Executing test SplitNCigarReadsIntegrationTest:test fix NDN
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[15:05:56] Executing test SplitNCigarReadsIntegrationTest:regression test for unmapped and unpaired reads
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[15:05:57] Executing test SplitNCigarReadsIntegrationTest:regression test for unmapped and unpaired reads
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[15:05:58] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs
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[15:05:58] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs 0 mismatches
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[15:05:58] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs 5 bases in overhang
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[15:05:59] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs not clipping
--------------------------------------------------------------------------------
[15:05:59] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs
Standard error
[May 27, 2025 at 3:05:56 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.18 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 3:05:56 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 3:05:57 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 3:05:58 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 3:05:58 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 3:05:58 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 3:05:59 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 3:05:59 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=706740224
[May 27, 2025 at 3:05:59 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=692060160