Class org.broadinstitute.hellbender.tools.walkers.variantutils.UpdateVCFSequenceDictionaryIntegrationTest

all > org.broadinstitute.hellbender.tools.walkers.variantutils > UpdateVCFSequenceDictionaryIntegrationTest
14

tests
0

failures
0

ignored
0.834s

duration
100%

successful

Tests

Test Duration Result
testBadContigLengthWithValidation 0.060s passed
testBadUpdateSequenceDictionary[0](src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/UpdateVCFSequenceDictionary/variantsWithDict.vcf, src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/UpdateVCFSequenceDictionary/variantsWithDict.vcf, null, null, false, false) 0.058s passed
testBadUpdateSequenceDictionary[1](src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/UpdateVCFSequenceDictionary/variantsNoDict.vcf, src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/UpdateVCFSequenceDictionary/variantsNoDict.vcf, null, null, false, false) 0.056s passed
testBadUpdateSequenceDictionary[2](src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/UpdateVCFSequenceDictionary/variantsNoDictWithBadContig.vcf, src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/UpdateVCFSequenceDictionary/variantsWithDict.vcf, null, null, false, false) 0.057s passed
testBadUpdateSequenceDictionary[3](src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/UpdateVCFSequenceDictionary/variantsNoDictWithBadContigLength.vcf, src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/UpdateVCFSequenceDictionary/variantsWithDict.vcf, null, null, false, false) 0.059s passed
testGoodUpdateSequenceDictionary[0](src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/UpdateVCFSequenceDictionary/variantsNoDict.vcf, src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/UpdateVCFSequenceDictionary/variantsWithDict.vcf, null, null, false, false) 0.062s passed
testGoodUpdateSequenceDictionary[1](src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/UpdateVCFSequenceDictionary/variantsNoDict.vcf, null, src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/UpdateVCFSequenceDictionary/exampleFASTA.fasta, null, false, false) 0.059s passed
testGoodUpdateSequenceDictionary[2](src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/UpdateVCFSequenceDictionary/variantsNoDict.vcf, src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/UpdateVCFSequenceDictionary/exampleFASTA.fasta, null, null, false, false) 0.061s passed
testGoodUpdateSequenceDictionary[3](src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/UpdateVCFSequenceDictionary/variantsNoDict.vcf, src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/UpdateVCFSequenceDictionary/exampleFASTA.dict, null, null, false, false) 0.060s passed
testGoodUpdateSequenceDictionary[4](src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/UpdateVCFSequenceDictionary/variantsNoDict.vcf, src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/UpdateVCFSequenceDictionary/exampleBAM.bam, null, null, false, false) 0.060s passed
testGoodUpdateSequenceDictionary[5](src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/UpdateVCFSequenceDictionary/variantsWithSubsetDict.vcf, src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/UpdateVCFSequenceDictionary/exampleFASTA.dict, null, null, true, false) 0.060s passed
testGoodUpdateSequenceDictionary[6](src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/UpdateVCFSequenceDictionary/variantsWithDictBadContigLength.vcf, src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/UpdateVCFSequenceDictionary/exampleFASTA.dict, null, null, true, true) 0.059s passed
testMasterDictionaryAmbiguous 0.062s passed
testUseMasterDictionary 0.061s passed

Standard error

[May 27, 2025 at 3:08:06 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.UpdateVCFSequenceDictionary done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1839202304
[May 27, 2025 at 3:08:06 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.UpdateVCFSequenceDictionary done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1839202304
[May 27, 2025 at 3:08:06 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.UpdateVCFSequenceDictionary done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1839202304
[May 27, 2025 at 3:08:06 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.UpdateVCFSequenceDictionary done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1839202304
[May 27, 2025 at 3:08:06 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.UpdateVCFSequenceDictionary done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1839202304
[May 27, 2025 at 3:08:06 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.UpdateVCFSequenceDictionary done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1839202304
[May 27, 2025 at 3:08:06 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.UpdateVCFSequenceDictionary done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1839202304
[May 27, 2025 at 3:08:06 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.UpdateVCFSequenceDictionary done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1839202304
[May 27, 2025 at 3:08:07 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.UpdateVCFSequenceDictionary done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1839202304
[May 27, 2025 at 3:08:07 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.UpdateVCFSequenceDictionary done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1839202304
[May 27, 2025 at 3:08:07 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.UpdateVCFSequenceDictionary done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1839202304
[May 27, 2025 at 3:08:07 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.UpdateVCFSequenceDictionary done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1839202304
[May 27, 2025 at 3:08:07 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.UpdateVCFSequenceDictionary done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1839202304
[May 27, 2025 at 3:08:07 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.UpdateVCFSequenceDictionary done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1839202304