Class org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSRIntegrationTest
Tests
| Test |
Duration |
Result |
| testApplyIndelRecalibration |
0.547s |
passed |
| testApplySNPRecalibration |
1.716s |
passed |
| testApplyVQSRAlleleSpecificINDELmode |
0.078s |
passed |
| testApplyVQSRAlleleSpecificINDELmodeGZIPIndex |
0.114s |
passed |
| testApplyVQSRAlleleSpecificSNPmode |
0.075s |
passed |
| testApplyVQSRSnpAndIndelTogether |
0.066s |
passed |
| testApplyVQSRSnpAndIndelTogetherExcludeFiltered |
0.061s |
passed |
Standard output
--------------------------------------------------------------------------------
[15:08:11] Executing test ApplyVQSRIntegrationTest:testApplyVQSRIndel
--------------------------------------------------------------------------------
[15:08:12] Executing test ApplyVQSRIntegrationTest:testApplyVQSRSNP
--------------------------------------------------------------------------------
[15:08:13] Executing test ApplyVQSRIntegrationTest:testApplyVQSRAlleleSpecificINDELmode
--------------------------------------------------------------------------------
[15:08:14] Executing test ApplyVQSRIntegrationTest:testApplyVQSRAlleleSpecificINDELmodeGZIP
--------------------------------------------------------------------------------
[15:08:14] Executing test ApplyVQSRIntegrationTest:testApplyVQSRAlleleSpecificSNPmode
--------------------------------------------------------------------------------
[15:08:14] Executing test ApplyVQSRIntegrationTest:testApplyVQSRSnpAndIndelTogether
Standard error
[May 27, 2025 at 3:08:12 PM UTC] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1839202304
[May 27, 2025 at 3:08:13 PM UTC] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.03 minutes.
Runtime.totalMemory()=1839202304
[May 27, 2025 at 3:08:14 PM UTC] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1839202304
[May 27, 2025 at 3:08:14 PM UTC] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1839202304
[May 27, 2025 at 3:08:14 PM UTC] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1839202304
[May 27, 2025 at 3:08:14 PM UTC] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1839202304
[May 27, 2025 at 3:08:14 PM UTC] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1839202304