Class org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest

all > org.broadinstitute.hellbender.engine > MultiVariantWalkerIntegrationTest
tests
failures
ignored
0.332s
duration
100%
successful
Tests
Standard error
Tests

Test	Duration	Result
testDuplicateSources	0.019s	passed
testGetCompatibleHeader	0.033s	passed
testGetConflictingHeader	0.026s	passed
testIteratorOverlapping	0.027s	passed
testNoDictionaryForAllInputs	0.020s	passed
testNoDictionaryForOneInput	0.021s	passed
testNoDictionaryForOnlyInput	0.024s	passed
testVariantOrder[0]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf], null, 26)	0.020s	passed
testVariantOrder[1]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf], null, 13)	0.023s	passed
testVariantOrder[2]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf], null, 26)	0.021s	passed
testVariantOrder[3]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_1.vcf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_2.vcf], null, 26)	0.020s	passed
testVariantOrder[4]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf], 1, 14)	0.019s	passed
testVariantOrder[5]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf], 1, 7)	0.018s	passed
testVariantOrder[6]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf], 1, 14)	0.022s	passed
testVariantOrder[7]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf], 2:200-600, 3)	0.019s	passed
testVariantsFromBundleOrder	-	ignored
Standard error

15:47:10.685 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:47:10.686 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-gf5385f1-SNAPSHOT
15:47:10.686 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:47:10.686 INFO  TestMultiVariantWalker - Executing as root@1be272c3efa7 on Linux v6.11.0-1014-azure amd64
15:47:10.686 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
15:47:10.686 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 3:47:10 PM GMT
15:47:10.686 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:47:10.686 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:47:10.686 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:47:10.686 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:47:10.686 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:47:10.686 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:47:10.687 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
15:47:10.687 INFO  TestMultiVariantWalker - Inflater: IntelInflater
15:47:10.687 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
15:47:10.687 INFO  TestMultiVariantWalker - Requester pays: disabled
15:47:10.687 INFO  TestMultiVariantWalker - Initializing engine
15:47:10.689 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
15:47:10.690 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 3:47:10 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1797259264
15:47:10.710 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:47:10.710 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-gf5385f1-SNAPSHOT
15:47:10.710 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:47:10.710 INFO  TestMultiVariantWalker - Executing as root@1be272c3efa7 on Linux v6.11.0-1014-azure amd64
15:47:10.711 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
15:47:10.711 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 3:47:10 PM GMT
15:47:10.711 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:47:10.711 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:47:10.711 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:47:10.711 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:47:10.711 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:47:10.711 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:47:10.711 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
15:47:10.711 INFO  TestMultiVariantWalker - Inflater: IntelInflater
15:47:10.711 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
15:47:10.711 INFO  TestMultiVariantWalker - Requester pays: disabled
15:47:10.711 INFO  TestMultiVariantWalker - Initializing engine
15:47:10.713 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
15:47:10.714 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
15:47:10.719 INFO  TestMultiVariantWalker - Done initializing engine
15:47:10.719 INFO  ProgressMeter - Starting traversal
15:47:10.719 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
15:47:10.722 INFO  ProgressMeter -             unmapped              0.0                    26         520000.0
15:47:10.722 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
15:47:10.722 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 3:47:10 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1797259264
15:47:10.743 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:47:10.744 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-gf5385f1-SNAPSHOT
15:47:10.744 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:47:10.744 INFO  TestMultiVariantWalker - Executing as root@1be272c3efa7 on Linux v6.11.0-1014-azure amd64
15:47:10.744 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
15:47:10.744 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 3:47:10 PM GMT
15:47:10.744 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:47:10.744 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:47:10.744 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:47:10.744 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:47:10.744 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:47:10.744 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:47:10.744 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
15:47:10.744 INFO  TestMultiVariantWalker - Inflater: IntelInflater
15:47:10.744 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
15:47:10.745 INFO  TestMultiVariantWalker - Requester pays: disabled
15:47:10.745 INFO  TestMultiVariantWalker - Initializing engine
15:47:10.746 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
15:47:10.747 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariantsConflictingDictionary.vcf
15:47:10.749 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 3:47:10 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1797259264
15:47:10.768 INFO  TestMultiVariantWalkerIterator - ------------------------------------------------------------
15:47:10.768 INFO  TestMultiVariantWalkerIterator - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-gf5385f1-SNAPSHOT
15:47:10.768 INFO  TestMultiVariantWalkerIterator - For support and documentation go to https://software.broadinstitute.org/gatk/
15:47:10.768 INFO  TestMultiVariantWalkerIterator - Executing as root@1be272c3efa7 on Linux v6.11.0-1014-azure amd64
15:47:10.768 INFO  TestMultiVariantWalkerIterator - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
15:47:10.768 INFO  TestMultiVariantWalkerIterator - Start Date/Time: May 27, 2025 at 3:47:10 PM GMT
15:47:10.768 INFO  TestMultiVariantWalkerIterator - ------------------------------------------------------------
15:47:10.768 INFO  TestMultiVariantWalkerIterator - ------------------------------------------------------------
15:47:10.768 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:47:10.769 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:47:10.769 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:47:10.769 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:47:10.769 INFO  TestMultiVariantWalkerIterator - Deflater: IntelDeflater
15:47:10.769 INFO  TestMultiVariantWalkerIterator - Inflater: IntelInflater
15:47:10.769 INFO  TestMultiVariantWalkerIterator - GCS max retries/reopens: 20
15:47:10.769 INFO  TestMultiVariantWalkerIterator - Requester pays: disabled
15:47:10.769 INFO  TestMultiVariantWalkerIterator - Initializing engine
15:47:10.770 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_WithOverlap.vcf
15:47:10.772 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_WithOverlap.vcf
15:47:10.774 INFO  TestMultiVariantWalkerIterator - Done initializing engine
15:47:10.774 INFO  ProgressMeter - Starting traversal
15:47:10.774 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
15:47:10.775 INFO  ProgressMeter -             unmapped              0.0                    28         Infinity
15:47:10.775 INFO  ProgressMeter - Traversal complete. Processed 28 total variants in 0.0 minutes.
15:47:10.775 INFO  TestMultiVariantWalkerIterator - Shutting down engine
[May 27, 2025 at 3:47:10 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalkerIterator done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1797259264
15:47:10.790 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:47:10.790 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-gf5385f1-SNAPSHOT
15:47:10.790 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:47:10.790 INFO  TestMultiVariantWalker - Executing as root@1be272c3efa7 on Linux v6.11.0-1014-azure amd64
15:47:10.790 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
15:47:10.790 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 3:47:10 PM GMT
15:47:10.790 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:47:10.790 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:47:10.790 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:47:10.790 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:47:10.790 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:47:10.790 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:47:10.790 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
15:47:10.791 INFO  TestMultiVariantWalker - Inflater: IntelInflater
15:47:10.791 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
15:47:10.791 INFO  TestMultiVariantWalker - Requester pays: disabled
15:47:10.791 INFO  TestMultiVariantWalker - Initializing engine
15:47:10.792 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf
15:47:10.794 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf
15:47:10.795 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf. The input may not exist or may not have a valid header
15:47:10.795 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf. The input may not exist or may not have a valid header
15:47:10.795 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 3:47:10 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1797259264
15:47:10.810 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:47:10.810 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-gf5385f1-SNAPSHOT
15:47:10.810 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:47:10.811 INFO  TestMultiVariantWalker - Executing as root@1be272c3efa7 on Linux v6.11.0-1014-azure amd64
15:47:10.811 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
15:47:10.811 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 3:47:10 PM GMT
15:47:10.811 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:47:10.811 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:47:10.811 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:47:10.811 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:47:10.811 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:47:10.811 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:47:10.811 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
15:47:10.811 INFO  TestMultiVariantWalker - Inflater: IntelInflater
15:47:10.811 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
15:47:10.811 INFO  TestMultiVariantWalker - Requester pays: disabled
15:47:10.811 INFO  TestMultiVariantWalker - Initializing engine
15:47:10.812 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
15:47:10.813 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf
15:47:10.814 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf. The input may not exist or may not have a valid header
15:47:10.815 INFO  TestMultiVariantWalker - Done initializing engine
15:47:10.815 INFO  ProgressMeter - Starting traversal
15:47:10.815 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
15:47:10.816 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
15:47:10.816 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
15:47:10.817 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 3:47:10 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1797259264
15:47:10.837 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:47:10.837 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-gf5385f1-SNAPSHOT
15:47:10.837 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:47:10.837 INFO  TestMultiVariantWalker - Executing as root@1be272c3efa7 on Linux v6.11.0-1014-azure amd64
15:47:10.837 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
15:47:10.837 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 3:47:10 PM GMT
15:47:10.837 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:47:10.837 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:47:10.837 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:47:10.838 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:47:10.838 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:47:10.838 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:47:10.838 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
15:47:10.838 INFO  TestMultiVariantWalker - Inflater: IntelInflater
15:47:10.838 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
15:47:10.838 INFO  TestMultiVariantWalker - Requester pays: disabled
15:47:10.838 INFO  TestMultiVariantWalker - Initializing engine
15:47:10.839 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf
15:47:10.840 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf. The input may not exist or may not have a valid header
15:47:10.840 INFO  TestMultiVariantWalker - Done initializing engine
15:47:10.840 INFO  ProgressMeter - Starting traversal
15:47:10.840 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
15:47:10.840 INFO  ProgressMeter -             unmapped              0.0                    13         Infinity
15:47:10.840 INFO  ProgressMeter - Traversal complete. Processed 13 total variants in 0.0 minutes.
15:47:10.840 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 3:47:10 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1797259264
15:47:10.856 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:47:10.856 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-gf5385f1-SNAPSHOT
15:47:10.856 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:47:10.856 INFO  TestMultiVariantWalker - Executing as root@1be272c3efa7 on Linux v6.11.0-1014-azure amd64
15:47:10.856 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
15:47:10.856 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 3:47:10 PM GMT
15:47:10.856 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:47:10.856 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:47:10.856 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:47:10.856 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:47:10.857 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:47:10.857 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:47:10.857 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
15:47:10.857 INFO  TestMultiVariantWalker - Inflater: IntelInflater
15:47:10.857 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
15:47:10.857 INFO  TestMultiVariantWalker - Requester pays: disabled
15:47:10.857 INFO  TestMultiVariantWalker - Initializing engine
15:47:10.858 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
15:47:10.859 INFO  TestMultiVariantWalker - Done initializing engine
15:47:10.859 INFO  ProgressMeter - Starting traversal
15:47:10.859 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
15:47:10.860 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
15:47:10.860 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
15:47:10.860 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 3:47:10 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1797259264
15:47:10.880 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:47:10.880 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-gf5385f1-SNAPSHOT
15:47:10.880 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:47:10.880 INFO  TestMultiVariantWalker - Executing as root@1be272c3efa7 on Linux v6.11.0-1014-azure amd64
15:47:10.880 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
15:47:10.880 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 3:47:10 PM GMT
15:47:10.880 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:47:10.880 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:47:10.880 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:47:10.880 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:47:10.880 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:47:10.881 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:47:10.881 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
15:47:10.881 INFO  TestMultiVariantWalker - Inflater: IntelInflater
15:47:10.881 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
15:47:10.881 INFO  TestMultiVariantWalker - Requester pays: disabled
15:47:10.881 INFO  TestMultiVariantWalker - Initializing engine
15:47:10.882 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
15:47:10.883 INFO  TestMultiVariantWalker - Done initializing engine
15:47:10.883 INFO  ProgressMeter - Starting traversal
15:47:10.883 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
15:47:10.884 INFO  ProgressMeter -             unmapped              0.0                    13         780000.0
15:47:10.884 INFO  ProgressMeter - Traversal complete. Processed 13 total variants in 0.0 minutes.
15:47:10.884 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 3:47:10 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1797259264
15:47:10.899 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:47:10.899 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-gf5385f1-SNAPSHOT
15:47:10.899 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:47:10.899 INFO  TestMultiVariantWalker - Executing as root@1be272c3efa7 on Linux v6.11.0-1014-azure amd64
15:47:10.899 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
15:47:10.899 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 3:47:10 PM GMT
15:47:10.899 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:47:10.899 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:47:10.900 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:47:10.900 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:47:10.900 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:47:10.900 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:47:10.900 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
15:47:10.900 INFO  TestMultiVariantWalker - Inflater: IntelInflater
15:47:10.900 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
15:47:10.900 INFO  TestMultiVariantWalker - Requester pays: disabled
15:47:10.900 INFO  TestMultiVariantWalker - Initializing engine
15:47:10.901 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
15:47:10.902 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
15:47:10.904 INFO  TestMultiVariantWalker - Done initializing engine
15:47:10.904 INFO  ProgressMeter - Starting traversal
15:47:10.904 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
15:47:10.905 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
15:47:10.905 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
15:47:10.905 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 3:47:10 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1797259264
15:47:10.919 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:47:10.919 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-gf5385f1-SNAPSHOT
15:47:10.919 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:47:10.919 INFO  TestMultiVariantWalker - Executing as root@1be272c3efa7 on Linux v6.11.0-1014-azure amd64
15:47:10.919 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
15:47:10.919 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 3:47:10 PM GMT
15:47:10.919 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:47:10.919 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:47:10.919 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:47:10.919 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:47:10.920 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:47:10.920 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:47:10.920 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
15:47:10.920 INFO  TestMultiVariantWalker - Inflater: IntelInflater
15:47:10.920 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
15:47:10.920 INFO  TestMultiVariantWalker - Requester pays: disabled
15:47:10.920 INFO  TestMultiVariantWalker - Initializing engine
15:47:10.921 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_1.vcf
15:47:10.922 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_2.vcf
15:47:10.924 INFO  TestMultiVariantWalker - Done initializing engine
15:47:10.924 INFO  ProgressMeter - Starting traversal
15:47:10.924 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
15:47:10.925 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
15:47:10.925 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
15:47:10.925 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 3:47:10 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1797259264
15:47:10.940 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:47:10.940 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-gf5385f1-SNAPSHOT
15:47:10.940 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:47:10.940 INFO  TestMultiVariantWalker - Executing as root@1be272c3efa7 on Linux v6.11.0-1014-azure amd64
15:47:10.940 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
15:47:10.940 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 3:47:10 PM GMT
15:47:10.940 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:47:10.940 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:47:10.941 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:47:10.941 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:47:10.941 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:47:10.941 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:47:10.941 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
15:47:10.941 INFO  TestMultiVariantWalker - Inflater: IntelInflater
15:47:10.941 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
15:47:10.941 INFO  TestMultiVariantWalker - Requester pays: disabled
15:47:10.941 INFO  TestMultiVariantWalker - Initializing engine
15:47:10.942 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
15:47:10.943 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
15:47:10.944 INFO  TestMultiVariantWalker - Done initializing engine
15:47:10.944 INFO  ProgressMeter - Starting traversal
15:47:10.944 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
15:47:10.945 INFO  ProgressMeter -             unmapped              0.0                    14         Infinity
15:47:10.945 INFO  ProgressMeter - Traversal complete. Processed 14 total variants in 0.0 minutes.
15:47:10.945 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 3:47:10 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1797259264
15:47:10.959 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:47:10.959 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-gf5385f1-SNAPSHOT
15:47:10.959 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:47:10.959 INFO  TestMultiVariantWalker - Executing as root@1be272c3efa7 on Linux v6.11.0-1014-azure amd64
15:47:10.959 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
15:47:10.959 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 3:47:10 PM GMT
15:47:10.959 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:47:10.959 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:47:10.959 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:47:10.959 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:47:10.959 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:47:10.959 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:47:10.959 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
15:47:10.959 INFO  TestMultiVariantWalker - Inflater: IntelInflater
15:47:10.960 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
15:47:10.960 INFO  TestMultiVariantWalker - Requester pays: disabled
15:47:10.960 INFO  TestMultiVariantWalker - Initializing engine
15:47:10.961 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
15:47:10.962 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
15:47:10.962 INFO  TestMultiVariantWalker - Done initializing engine
15:47:10.962 INFO  ProgressMeter - Starting traversal
15:47:10.962 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
15:47:10.963 INFO  ProgressMeter -             unmapped              0.0                     7         Infinity
15:47:10.963 INFO  ProgressMeter - Traversal complete. Processed 7 total variants in 0.0 minutes.
15:47:10.963 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 3:47:10 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1797259264
15:47:10.978 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:47:10.978 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-gf5385f1-SNAPSHOT
15:47:10.978 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:47:10.978 INFO  TestMultiVariantWalker - Executing as root@1be272c3efa7 on Linux v6.11.0-1014-azure amd64
15:47:10.978 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
15:47:10.978 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 3:47:10 PM GMT
15:47:10.978 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:47:10.978 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:47:10.978 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:47:10.978 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:47:10.978 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:47:10.978 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:47:10.978 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
15:47:10.978 INFO  TestMultiVariantWalker - Inflater: IntelInflater
15:47:10.979 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
15:47:10.979 INFO  TestMultiVariantWalker - Requester pays: disabled
15:47:10.979 INFO  TestMultiVariantWalker - Initializing engine
15:47:10.980 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
15:47:10.981 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
15:47:10.983 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
15:47:10.983 INFO  TestMultiVariantWalker - Done initializing engine
15:47:10.983 INFO  ProgressMeter - Starting traversal
15:47:10.983 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
15:47:10.984 INFO  ProgressMeter -             unmapped              0.0                    14         840000.0
15:47:10.984 INFO  ProgressMeter - Traversal complete. Processed 14 total variants in 0.0 minutes.
15:47:10.984 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 3:47:10 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1797259264
15:47:10.998 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:47:10.999 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-gf5385f1-SNAPSHOT
15:47:10.999 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:47:10.999 INFO  TestMultiVariantWalker - Executing as root@1be272c3efa7 on Linux v6.11.0-1014-azure amd64
15:47:10.999 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
15:47:10.999 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 3:47:10 PM GMT
15:47:10.999 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:47:10.999 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:47:10.999 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:47:10.999 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:47:10.999 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:47:10.999 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:47:10.999 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
15:47:10.999 INFO  TestMultiVariantWalker - Inflater: IntelInflater
15:47:10.999 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
15:47:10.999 INFO  TestMultiVariantWalker - Requester pays: disabled
15:47:10.999 INFO  TestMultiVariantWalker - Initializing engine
15:47:11.000 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
15:47:11.001 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
15:47:11.002 INFO  IntervalArgumentCollection - Processing 401 bp from intervals
15:47:11.003 INFO  TestMultiVariantWalker - Done initializing engine
15:47:11.003 INFO  ProgressMeter - Starting traversal
15:47:11.003 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
15:47:11.003 INFO  ProgressMeter -             unmapped              0.0                     3         Infinity
15:47:11.003 INFO  ProgressMeter - Traversal complete. Processed 3 total variants in 0.0 minutes.
15:47:11.003 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 3:47:11 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1797259264